Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02691 ATGGCAATACTTCGTCGTCTGTGCTTTTCTTCTCCAACGTATCTCTCCGCTGAAAAACCTCTCTCATCTCTTCAAAATTCTCGAAATCAATCCAACTATCGCAGCAATCTCTCTTTTTGCCATCCACCCTCTTCGTTTCAATTTCCAAGTCTTTCCCTTGTGAATAGCCCCAACTTCAGGACCAAAGAAACTCGAAACTTGGTTCTCAAATTCGCCTCTACTTCCCAAGAACAAGTGCTTGATTCTTCCCCGGCAAATGTTTCTGCTGAGGCCCAAGAGACAGAGgcagaaaatgaagaattttctaAAACCAGGTTACTTGCTTCCAACGTACCTTGGACTAGTACTCCCGAAGACATTCGTTCTCTGTTCGAGAGGCATGGAAAAGTCGTAGACGTTGAGCTTTCTATGTATAACAAGACCAGAAACAGGGGTTTAGCATTCATCGAAATGGGATCACCAGAAGAGGCTCTTGCAGCTCTCAAAAATCTCGAATCGTATGAGTACGAGGGTCGCATAATAAGAGTCAATTATGCCCGGtccagaaagaagaaaattccagCTTCTGTGCAACCGAAGCCGGTAACATTTAACTTGTTTATTGCAAATCTGTCCTACGAAGCGAGGTCAAAACATGTCAAGGAGTTTTTTGAGTCAGGAAGCAGTGGTGTTGTTTCTGCggaaattatatttcatgatAACCCTAGAAGATCATCTGGCTATGGATTTGTATCCTTCAAGTCCAAGAAGGAAGCTGACGCAGCTCTTTCTGAATTCCAAGGGAAGATTTTTATGGGAAGGCCACTCAGGGTAGCACGCGGTCGGCAATTTGTTAAACAAGCAATAGAGGAGAATGCGAGTGAGGAAAGAGCCAACAATGCTGCTTG 887 0.4171 MAILRRLCFSSPTYLSAEKPLSSLQNSRNQSNYRSNLSFCHPPSSFQFPSLSLVNSPNFRTKETRNLVLKFASTSQEQVLDSSPANVSAEAQETEAENEEFSKTRLLASNVPWTSTPEDIRSLFERHGKVVDVELSMYNKTRNRGLAFIEMGSPEEALAALKNLESYEYEGRIIRVNYARSRKKKIPASVQPKPVTFNLFIANLSYEARSKHVKEFFESGSSGVVSAEIIFHDNPRRSSGYGFVSFKSKKEADAALSEFQGKIFMGRPLRVARGRQFVKQAIEENASEERANNAA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02691 295 CDD RRM_SF 199 271 - -
Bva06g02691 295 MobiDBLite consensus disorder prediction 80 101 - -
Bva06g02691 295 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 291 - -
Bva06g02691 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 276 IPR000504 GO:0003723
Bva06g02691 295 PANTHER OS08G0483200 PROTEIN 1 291 - -
Bva06g02691 295 SMART rrm1_1 105 177 IPR000504 GO:0003723
Bva06g02691 295 SMART rrm1_1 198 272 IPR000504 GO:0003723
Bva06g02691 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Bva06g02691 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 270 IPR000504 GO:0003723
Bva06g02691 295 Gene3D - 187 281 IPR012677 -
Bva06g02691 295 CDD RRM_SF 106 177 - -
Bva06g02691 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Bva06g02691 295 Coils Coil 283 295 - -
Bva06g02691 295 Gene3D - 59 186 IPR012677 -
Bva06g02691 295 SUPERFAMILY RNA-binding domain, RBD 104 273 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02691 Bva-Chr6 16984323 16986561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02691 106 285 Eukaryotic Initiation Factors Gene Family AT3G16380 22.581 1.03e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02691 06 16984323 16986561 Bva06g02691 06 16984323 16986561 ECH