Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02686 ATGGCACTAGAGGCTGTGGTTTTCCCACAAGATCCATTTAGTAATTATAGTTGCAAGGATTTGTACTCTTTCTTAGCTGCAGCAGGAGGTGGAGCTTGGAATACCCATGACTACGGTAGTCTACGAGTAGAAGAAGACAAAGCCCTTGTTGGAATCATCAACAATAACGTAGTCGTAGAGCAGAATCTGCATGCAATTTGGgattctgcttcttcttccccttctCCTTCGCTACCATTGCAAAATGTTAAGGATCAATTGGACTCCCAGTCTTGTAATTCTCCCGCGGAAGCCACTACAGCGACGGCAACAACAACAGCACCGGGTCGGCGCAAACGTCGTCGCACCAAGAGCGCCAAGAACGAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTGGAGCGCAATCGGCGTAAACAGATGAACGAGTACCTCGCGGTGCTCCGATCCCTGATGCCTCCTTCTTATGTCCAAAGGGGTGACCAAGCCTCTATAATAGGAGGCGCCATTAACTTCGTCAAGGAACTAGAACAACTTTTACAGTCCATTGAggctcaaaagaaaacaaagcaacAAGAAGAACCGCTTAATCCCTCACCCTTTGCCGAGTTCTTCGCATTCCCACAGTACACAAGGTGGTGCAACACTTGCTCCTCCACCAACGACATGGCACGGAACCAGAGGCCCGTGGCTGACATAGAAGTCACGATGGTGGACAGCCACGCCAACCTCAAGATACTCTCCAAGAAACAATCGGGTCAGCTCACGAAGATGGTTGTTGGCCTTCAATCTCTCAGGCTCTCCATTCTCCATCTTAATGTTACCACTGTCGACGAAACGGTCCTTTACACCGTCAGTGTAAAGATCGAAGAAGGGTGTCAGCTGAATACAGTTGATGAAATCGCAGCTGCTGCGAATGAGCTGCTACGTAAAATTCAAGAGGAGGAGGAAGCTGCTTCAGCTGAatctgaaaattg 983 0.4639 MALEAVVFPQDPFSNYSCKDLYSFLAAAGGGAWNTHDYGSLRVEEDKALVGIINNNVVVEQNLHAIWDSASSSPSPSLPLQNVKDQLDSQSCNSPAEATTATATTTAPGRRKRRRTKSAKNEEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSIEAQKKTKQQEEPLNPSPFAEFFAFPQYTRWCNTCSSTNDMARNQRPVADIEVTMVDSHANLKILSKKQSGQLTKMVVGLQSLRLSILHLNVTTVDETVLYTVSVKIEEGCQLNTVDEIAAAANELLRKIQEEEEAASAESEN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02686 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Bva06g02686 327 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 318 - -
Bva06g02686 327 MobiDBLite consensus disorder prediction 70 107 - -
Bva06g02686 327 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Bva06g02686 327 Coils Coil 297 327 - -
Bva06g02686 327 CDD bHLH_AtFAMA_like 130 202 - -
Bva06g02686 327 Gene3D - 117 196 IPR036638 GO:0046983
Bva06g02686 327 MobiDBLite consensus disorder prediction 70 125 - -
Bva06g02686 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 198 IPR036638 GO:0046983
Bva06g02686 327 Coils Coil 175 195 - -
Bva06g02686 327 PANTHER MAX DIMERIZATION, MAD 1 318 - -
Bva06g02686 327 SMART finulus 133 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02686 Bva-Chr6 16968866 16970931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02686 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.570 4.61e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g02686 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02686 - - gmx:100803240 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02250 12 17209874 17212146 Bva06g02686 06 16968866 16970931 BWGD
Bva06g02686 06 16968866 16970931 Bva06g02686 06 16968866 16970931 ECH