Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02644 atgcTTCCTTTCCGGAGTTTCTGTGGGTTTGAGAGCTGGTTATCAGATAATAATGAGTGTATTCTAGAACCAAGCTCGTTGATCAAGTCCATGGAATTGGACGGAGGAAAATCGATTCTGAGCCCCGCGTCAAAGTTGGAGGGGAAATCAACGGAAGCATGCAAAAGTCACAGGGATGCTGAGAGGAGACGCCGGCAGCGAATCAACGCCCACCTCTCTACTCTACGCACTCTCCTCCCTAACGCAGCCAAGTCAGACAAGGCATCCTTGCTGGCTCAAGTGGTCCATCACGTGAAGGAGCTGAGGAAACAGGCCGATGACGTGGCGCGACGCCACTACGGAGGCTTTTCGTGCAGTAGTAGCAGCGGCGAGGACGGGTCGGAGTATGCAGAAACTGAGAAGTGGCCGTTCCCGGGTGAATCGGATGAGGTAACTCTGAGTTACTGCGACGATGCTGGCGAAGCCAAGCTCATGAAAGCTACGCTCTGCTGTGAGGACAGACCAAATCTGAACCGGGATCTAAACCAGGCAATCCGGTCGGTCCGGGCAAAGGCAGTGCGGGCGGAGATGATGACGGTTGGTGGGCGGACCAAGAGCGTTGTGGTAATGCAGTGGCCTGGTCATGGCGGAGAGGAGGAGGTTGCAGTACTGGATCGGGCCTTGAAAGCCGTGGTGGAGAATCGGGCTGTAGTAGGCCCAGGATTGGGCCGTATGGCGTTGGGTCACAAGCGGACCCGAACTAGTTATAGGACTGCTAACATGTA 764 0.5497 MLPFRSFCGFESWLSDNNECILEPSSLIKSMELDGGKSILSPASKLEGKSTEACKSHRDAERRRRQRINAHLSTLRTLLPNAAKSDKASLLAQVVHHVKELRKQADDVARRHYGGFSCSSSSGEDGSEYAETEKWPFPGESDEVTLSYCDDAGEAKLMKATLCCEDRPNLNRDLNQAIRSVRAKAVRAEMMTVGGRTKSVVVMQWPGHGGEEEVAVLDRALKAVVENRAVVGPGLGRMALGHKRTRTSYRTANM 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02644 254 MobiDBLite consensus disorder prediction 117 136 - -
Bva06g02644 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Bva06g02644 254 SMART finulus 58 107 IPR011598 GO:0046983
Bva06g02644 254 PANTHER OS09G0463900 PROTEIN 16 250 - -
Bva06g02644 254 PANTHER TRANSCRIPTION FACTOR BHLH30 16 250 IPR045847 GO:0003700|GO:0006355
Bva06g02644 254 Gene3D - 47 113 IPR036638 GO:0046983
Bva06g02644 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 109 IPR036638 GO:0046983
Bva06g02644 254 Pfam Helix-loop-helix DNA-binding domain 54 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02644 Bva-Chr6 16759318 16760885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02644 46 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.342 1.11e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g02644 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02644 - - gmx:100816394 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02644 06 16759318 16760885 Bva06g02644 06 16759318 16760885 ECH