Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02641 ATGGCAAGGGAGAAGATCAAGATCAGAAAAATTGACAACTTGACAGCGAGGCAGGTAACTTTCTCTAAGAGGAGACGAGGGCTCTTGAAGAAAGCTCAAGAGCTTGCTGTGCTGTGTGATGCTGAGGTTGGTCTCATTATTTTCTCTGCTACTGGGAAGCTCTTTGATTATGCCAGCTCCAGtaTAAAAGATATCATTACAAGATATGAGCTGCATGATTTCAACAAAACGCGCAGACCTTCTCTTGAGCTGCAGCTGGAGAATAGCAATAATATCAAATTGAGTAAAGAAGTTGCTGAGAAAACGAGCCAAATAAGGCGAATGAAAGGCGAGGATCTTCAAGGGCTAAGCTTGAATGAATTACAGGAACTAGAAAAAGTGCTTGAAACTGGACTTGGCCGCGTGATTGAGACAAAAGATAAAAGGATTATGAGTGACATTATTGCACTGCATAAAAAGGGAATCCAACTGGAAGAAGAGAACGAGAAGTTAAGGCAAAagATGGCGATGttggagaaaggaaaaagacctGTCTTGAAGGATTCCGATTTTGCCATACAACAGGAGGAAGGTGTCTCGTCAGAATCCATGACCAACACTGGCAGCTGCATCACTGACCCTCCTCCTGAGGATGATTTATCTGATACGTCTCTCAAGTTAGGGCTTCCATTCTCATA 677 0.4151 MAREKIKIRKIDNLTARQVTFSKRRRGLLKKAQELAVLCDAEVGLIIFSATGKLFDYASSSIKDIITRYELHDFNKTRRPSLELQLENSNNIKLSKEVAEKTSQIRRMKGEDLQGLSLNELQELEKVLETGLGRVIETKDKRIMSDIIALHKKGIQLEEENEKLRQKMAMLEKGKRPVLKDSDFAIQQEEGVSSESMTNTGSCITDPPPEDDLSDTSLKLGLPFS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02641 225 Pfam K-box region 89 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g02641 225 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Bva06g02641 225 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 220 - -
Bva06g02641 225 Coils Coil 147 174 - -
Bva06g02641 225 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Bva06g02641 225 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bva06g02641 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Bva06g02641 225 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g02641 225 MobiDBLite consensus disorder prediction 187 205 - -
Bva06g02641 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 MobiDBLite consensus disorder prediction 180 225 - -
Bva06g02641 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g02641 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02641 Bva-Chr6 16742373 16746495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02641 1 224 MADS-box Gene Family AT2G22540 56.904 2.04e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g02641 K-box 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02641 - - tcc:18591803 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02641 06 16742373 16746495 Bva06g02641 06 16742373 16746495 ECH