Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02625 ATGTATAGTCACGCTCAGGGAGTGAATATGCCCCCCCAGATCGGCACCGGCGAAGATGACGACGGTTCAGGCGCGGGAGCCGAGTCGATTGAAAACCACCACATACATTATGAACATGCTATGGAAGATGGTAGCGGTGGAGTTGGTGGCGTCGTTGAGGATGTTAGCTCCGATACTGTATATGCTACTGCCGGTGCAGGTGATGCCAGCCAGCTCACTCTTTCGTTTCGGGGCCAAGTCTATGTCTTCGACTCTGTGTCACCTGATCagGTTCAAGCAGTATTGTTACTGTTGGGGGGATGTGAACTATCCTCGGGTTCACAATGCGTGGACAGAGGGCCTCAAAATCTGAGGGGTGCAATGGATTATCCTGGAAGGTGTAGTCAACCGCAGCGAGCAGCCTCATTAAGTAGGTTTCgtcagaaaaggaaagagcGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAGGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCatcaaaaaaacaagaaggagCCAATAGTTGGGGTACTGTCCCAGAATCAGGGCAGGATGAAAATCAATCAGAAATCTCATGCACGCATTGTGGTACAAGTTCAAAATCTACCCCAATGATGCGGAGAGGCCCATCTGGTCCAAGATCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTACTTTGAGGGACCTTTCCAAGAGGAACCAGGAAAATTCTCTGGCACTAGTTGAGAAGGTTGATGGTGAAGGAAATGACTCAGACTGTCCAACTACCTTCCCCGCACATAACAATCTTGTTCCTCTCACGGGTAATGATAACCAAGCTTTAACAGCTGATAGATA 869 0.4614 MYSHAQGVNMPPQIGTGEDDDGSGAGAESIENHHIHYEHAMEDGSGGVGGVVEDVSSDTVYATAGAGDASQLTLSFRGQVYVFDSVSPDQVQAVLLLLGGCELSSGSQCVDRGPQNLRGAMDYPGRCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQEGANSWGTVPESGQDENQSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQENSLALVEKVDGEGNDSDCPTTFPAHNNLVPLTGNDNQALTADR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02625 289 Pfam CCT motif 132 174 IPR010402 GO:0005515
Bva06g02625 289 SMART tify_2 65 100 IPR010399 -
Bva06g02625 289 Gene3D - 190 249 IPR013088 GO:0006355|GO:0008270
Bva06g02625 289 Pfam tify domain 69 99 IPR010399 -
Bva06g02625 289 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Bva06g02625 289 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Bva06g02625 289 PANTHER GATA TRANSCRIPTION FACTOR 25 19 264 - -
Bva06g02625 289 PANTHER GATA TRANSCRIPTION FACTOR 28 19 264 IPR045280 GO:0006355
Bva06g02625 289 MobiDBLite consensus disorder prediction 1 28 - -
Bva06g02625 289 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Bva06g02625 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 246 - -
Bva06g02625 289 CDD ZnF_GATA 199 245 IPR000679 GO:0006355|GO:0043565
Bva06g02625 289 ProSiteProfiles GATA-type zinc finger domain profile. 194 254 IPR000679 GO:0006355|GO:0043565
Bva06g02625 289 MobiDBLite consensus disorder prediction 168 217 - -
Bva06g02625 289 MobiDBLite consensus disorder prediction 266 289 - -
Bva06g02625 289 MobiDBLite consensus disorder prediction 173 213 - -
Bva06g02625 289 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Bva06g02625 289 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02625 Bva-Chr6 16618144 16622308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02625 13 288 Tify Gene Family AT4G24470 49.836 3.70e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva06g02625 CCT 3.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02625 - - pvu:PHAVU_008G182900g 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02625 06 16618144 16622308 Bva06g02625 06 16618144 16622308 ECH