Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02624 ATGGCGGCGGTTAATCCTCAGCCTCTTCAGGCGCTTCCATTCGAGGAACATGGACGAGGCCCGATAACGATCGAGGACGATGACGCTGAGTATGAGGATTGTGTTGGGAGTGGCGATGGTATGGATGagatggaagaggtaaatattaattcagTAAGTGTTGCTAACCATGGGGGAGTTGTTATGGCGTCTCGTACTAGTGAGCTCACACTTTCTTTTGAGGGCGAGGTTTACGTGTTCCCTGCTGTGACTCCTGAAAAGGTACAAGCGGTTTTGCTTCTTTTGGGTAGTCGTGATGTGCTGACGGGTGTGCCTACTATTGAAGTACCATTTGATCAAAGTAACAAGGGAATCGGTGACACTCCAAAGCGTTCAGACCTTTCGCGAAGAATAGCATCTTTGGTTAGATTTCGGGAAAAGCGAAAGGAAAGATgttttgacaagaaaattagGTACACTGTGCGAAAAGAGGTGGCACAGAGGATGCATCGCAAGAATGGGCAATTTGCATCTCTGAAAGACAGTCCAGGTTCATCTAATTGGGACTCTGCACAGAGTTTCCATCAAGATGGCACTCCTCATTCTGAAACTGTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCGATGCGCCGTGGACCAGCTGGGCCAAGAACACTATGTAATGCGTGCGGTCTTATGTGGGCAAACAAGGGTACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTATTGAGCAAAATGAACCGGAGACTCCTATTGATCTCAAGCCTACTATTCTGGAAGGAGAATTGCCTGGCATCCAGGATGAGCAAGGAACATCTCAGGAACCTGCTGAGGCTGTAACTGAAGGATATAATGACAATGCTATCAACCCAGATGATGTGGAATTGTCTGAATCTGCTGAACACTACACCACAGTCTGCCGACAGGAATTGTTCGTTCTACAGAAAATGATGATGAACAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGAAGTTGACATTCCTGGAAATTTTGATTAGAAGGCATTG 1058 0.4442 MAAVNPQPLQALPFEEHGRGPITIEDDDAEYEDCVGSGDGMDEMEEVNINSVSVANHGGVVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGSRDVLTGVPTIEVPFDQSNKGIGDTPKRSDLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKDSPGSSNWDSAQSFHQDGTPHSETVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSIEQNEPETPIDLKPTILEGELPGIQDEQGTSQEPAEAVTEGYNDNAINPDDVELSESAEHYTTVCRQELFVLQKMMMNRNLWLSFLILQIQKLTFLEILIRRH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02624 352 Gene3D - 193 254 IPR013088 GO:0006355|GO:0008270
Bva06g02624 352 Pfam tify domain 65 96 IPR010399 -
Bva06g02624 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bva06g02624 352 CDD ZnF_GATA 200 244 IPR000679 GO:0006355|GO:0043565
Bva06g02624 352 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bva06g02624 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 316 IPR045280 GO:0006355
Bva06g02624 352 MobiDBLite consensus disorder prediction 171 192 - -
Bva06g02624 352 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Bva06g02624 352 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Bva06g02624 352 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Bva06g02624 352 MobiDBLite consensus disorder prediction 1 22 - -
Bva06g02624 352 ProSiteProfiles GATA-type zinc finger domain profile. 195 253 IPR000679 GO:0006355|GO:0043565
Bva06g02624 352 Pfam CCT motif 130 171 IPR010402 GO:0005515
Bva06g02624 352 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Bva06g02624 352 SMART tify_2 62 97 IPR010399 -
Bva06g02624 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 316 - -
Bva06g02624 352 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02624 Bva-Chr6 16612546 16616811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02624 10 254 Tify Gene Family AT1G51600 47.510 1.45e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva06g02624 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02624 - - zju:107421329 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02624 06 16612546 16616811 Bva06g02624 06 16612546 16616811 ECH