Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02620 ATGACAACGCAAGGAGTGCAGTTGATTATTGAAGATAGTCAtGCGGTGATGGACAATGGCATACTACAAGTGAGGATTTCCAAACCAGGTGGATTCGTCACTGGAATACGATATAATGGCGTTGATAATCTGCTAGAAGTTCTCAACGAAAGAGATAATAGAGGGTACTGGGACGTTGTTTGGAGTGAAGCAGGCAGTACGGGCACAACTGGGACATTTGAACGGATTGTGGGAACAAGTTTCAGAGTTATAGTGGAAAATGAAGAACTGGTGGAGATCTCATTTACAAGAACTTGGGATTCGTCTTTGAACGGAAAGCTTTCGCCCCTAAACATAGATAAAAGATATGCGATGCTTCGCAATTCCTCAGGCTTCTACTCATACGCCATATTTGAACACTTGGAAGAGTGGCCAGCTTTCAACATACCTCAAATCAGGATTGTCTTCAAGCTCCGAAAGGACAAGTTCCATTATATGGCGATAGCAGATGATAGGCAAAGATTTATGCCTCTTCCCGATGACCGGTTACCGGGAAGGGGACAAGAATTAGCCACCCCAGAAGCAGTCTTACTTGTTAATCCCGTGGAGCCAGAGTTCAAAGGAGAGGTGGATGACAAGTATCAATACTCAAGTGATAACAAAGATCTCGAAGTCCATGGGTGGATAAGCTCCGAGACCCCAACGGATCCAGCTACGGGTTTCTGGGTAATCATACCAAGCAATGAGTTCCGATCAGGTGGTCCCGTTAAACAGAACCTCACCTCCCATGTAGGCCCCATCAGCCTCGCAATGTTTCTGAGTGCTCACTATGCAGGAGAGGATCTTGTTCTGAAACTACAACCAAATGAACCATGGAAGAAGGTTTTCGGGCCAGTCTTTATGTATCTTAACGCTTTGTTGGATAATGATGATCCACTCTGGCTCTGGGAAGATGCCAAAATTCAGATGACAAAGGAAGTCCAATGTTGGCCCTATGATTTTCCGGCTTCAGAGGATTACCAAAAGGCTGATCAGCGGGGCTCTGTTTTTGGCACATTACAAATCCGAGACTGGTTCTTAAGTGATGATTATATTCCGGCTGAAGGCGCCTACGTGGGACTGGCACCACCAGGAGACGCAGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACCAGAGTTGACGAGGAAGGCAGCTTCTCAATTAGTAATGTACGCTGTGGGGATTATAATCTGTATGCATGGGTACCTGGCTTCATCGGAGAGTATTGGAACAAACTTGTTCTCACCATAACCCCAgGTTGTCAAATTAATGTTGGTGATATTGTGTACGAACCCCCAAGAGATGGTCCAACATTATGGGAAATAGGGATTCCTGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCCAATCCTAAGTACATAAACAAGCTCTATGTCAACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAAATACGCAGATTTATACCCAAATGAGGATTTGATTTATACCGTTGGCGTTAGTGACTGGACACAAGATTGGTTCTTTGCACAGGTTACCAGGAAGGAAGATGATGACACTTACCAGGGAACTACTTGGCAAATTAAATTCAAGCTCGAGAATGTGGAGGCAAGTGGGACCTATAAACTACGATTGGCACTTGCGACTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATGATCCAAAAGAAGATCCTGTATTTACTACTGGGGTGATTGGAAAAGACAACACCATAGCTAGACATGGAATTCATGGACTCTACAGACTATACAACATTGATATATCAAGTGTTTTGCTTGTGGAGGGCGATAATACTATCTATCTCACACAGGCTATAGCCACTGGCCCTTTGCAGGGGATAATGTATGACTATGTTCGTTTAGAAGGCCCCCCAATCCCATTCCCTTA 1928 0.4455 MTTQGVQLIIEDSHAVMDNGILQVRISKPGGFVTGIRYNGVDNLLEVLNERDNRGYWDVVWSEAGSTGTTGTFERVIVENEELVEISFTRTWDSSLNGKLSPLNIDKRYAMLRNSSGFYSYAIFEHLEEWPAFNIPQIRIVFKLRKDKFHYMAIADDRQRFMPLPDDRLPGRGQELATPEAVLLVNPVEPEFKGEVDDKYQYSSDNKDLEVHGWISSETPTDPATGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLQPNEPWKKVFGPVFMYLNALLDNDDPLWLWEDAKIQMTKEVQCWPYDFPASEDYQKADQRGSVFGTLQIRDWFLSDDYIPAEGAYVGLAPPGDAGSWQRECKGYQFWTRVDEEGSFSISNVRCGDYNLYAWVPGFIGEYWNKLVLTITPGCQINVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWEKYADLYPNEDLIYTVGVSDWTQDWFFAQVTRKEDDDTYQGTTWQIKFKLENVEASGTYKLRLALATANVSELQVRVNDPKEDPVFTTGVIGKDNTIARHGIHGLYRLYNIDISSVLLVEGDNTIYLTQAIATGPLQGIMYDYVRLEGPPIPFP 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02620 635 CDD RGL4_C 442 628 - -
Bva06g02620 635 Pfam Rhamnogalacturonate lyase family 11 196 IPR010325 -
Bva06g02620 635 Pfam Polysaccharide lyase family 4, domain III 440 627 IPR029411 -
Bva06g02620 635 Gene3D - 6 272 IPR014718 GO:0030246
Bva06g02620 635 CDD RGL4_M 331 430 IPR029413 -
Bva06g02620 635 CDD RGL4_N 11 298 - -
Bva06g02620 635 SUPERFAMILY Galactose-binding domain-like 437 628 IPR008979 -
Bva06g02620 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 631 - -
Bva06g02620 635 SUPERFAMILY Galactose mutarotase-like 13 290 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bva06g02620 635 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Bva06g02620 635 Gene3D - 328 427 - -
Bva06g02620 635 Gene3D - 438 628 - -
Bva06g02620 635 PANTHER LG27/30-LIKE GENE 2 631 - -
Bva06g02620 635 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02620 Bva-Chr6 16560053 16563653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02620 1 630 Polysaccharide Lyase AT1G09890 64.734 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02620 K18195 - gmx:100815677 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02620 06 16560053 16563653 Bva06g02620 06 16560053 16563653 ECH