Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02619 ATGGCGACCCCAGGGGTACGGTTGCACTTTCAAGGTCGACATGTGGTGATGGATAATGGAATACTCCAAGTCGCCTTATCAAATCCGGATGGAATTGTTACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTCCTTAACAACGAGTCTAATAGAGGGTACTGGGACCTCGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGCTTTAGAGTTATAGTTCAAAATGAGGAACAGGTGGAACTTTCATTCACAAGAATGTGGGATCCTTCTCTCGAGGGAAAATATGTCCCCTTAAATATTGACAAAAGATTTATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTACGCCATATATGAGCACTTAAACGGCTGGCCAGATTTTGATCTTGGTGAAACAAGGATCACATTCAAGCTCAGAAAAGACAAGTTTAATTACATGGCCATGGCAGACAATAGGCGAAGGATTATGCCTTTTCCAGATGATCGCTTACCAGGAAGATGTCAACCTTTGGCCTACCAGGAAGCTGTCCTACTTGTCAATCCCAGGGATCCACAACTCAGAGGAGAGGTGGATGACAAATATCAATATTCATGTCAAAACATGGATAATCAAGTACACGGGTGGATATCTTTCAATCCACCAGTAGGAATCTGGCAGATCACACCTAGTGATGAGTTCCGAACTGGTGGACCgcacaaacaaaatttaacctCACATGTAGGCCCGACCATGCTTGCAATGTTTCATAGTGGTCATTATGCGGGACTGGATTTGGTGCCAAAAATTAGAGCTGGTGAACCATGGAAGAAGGTTTTCGGTCCTGTTTTTATCTATGTCAATTCTGGATCTGTTGGTGATGACCCACTTTGGCTATGGGAGGATGCTAAAATACAGATGATGACTGAAGTCCAAAACTGGCCATACTCTTTTCCTGCGTCAGAGGATTTCTTAAAGTCAGATCAACGGGGCAATGTTAGTGGAAGACTACTTGTCCTAGACAGGTACGTCAGCACCGATTTGATACCAGCAAATGGTGCTTTTGTTGGACTGGCTCCACCAGGAGATATAGGTTCATGGCAAAGAGAATgcaagGATTATCAGTTCTGGACCAGAGCAGATGAGAATGGATTTTTTACCATAAGTAACGTGCGTCACGGTGACTATAACCTGTATGCTTGGGTCCCTGGTTTTATTGGAGACTATAAACTTGATGATTTGATGAAGATAGCCTCAGGTTCTTACAATGAAGTGGGTGAACTTGGATATGAGCCTCCAAGGGATGGGCCAACATTGTGGGAAATCGGCATTCCAGATAGATCAGCTGCAGAATTTTACGTTCCTGATCCTGATCcaaaatatgttaataagCTTTACATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTACACAGAATTGTATCCGGATGGAGATCTGGTTTACACAATTGGTGCTAGTGACTATTCTAAGGATTGGTTTTTTGCTCAGGTTCCCAGAAGAAAACAGGATAACACTTATCAAGGAACAACTTGGCAAATCAAGTTTGAACTTGATAACTTGATTAAGGACAGCACTTATAAATTGAGAGTTGCAATTGCATCTGCAACTTTAGCTGAAGTGCAGGTTCGAGTGAATGACCCAAATTCAAGGCGTCCCGTATTTACCACTGGATTAATAGGTAGGGACAACTCAGTAGCAAGACATGGAATTCATGGAATCTACAGGCTTTACCATGTGAATATACCAGGTTCTTTGCTTGTTCATGGCACAaataccatatttttaacaCAGCCAAGATGCACCAGCCCTTTCCAGGGAATCATGTATGATTATATTCGTTTGGAATGCCCTCCTTGTTTTTA 1904 0.4175 MATPGVRLHFQGRHVVMDNGILQVALSNPDGIVTGIRYNGVDNLLEVLNNESNRGYWDLVWSAPGSKGIFDVIKGTCFRVIVQNEEQVELSFTRMWDPSLEGKYVPLNIDKRFIMLRGSSGFYSYAIYEHLNGWPDFDLGETRITFKLRKDKFNYMAMADNRRRIMPFPDDRLPGRCQPLAYQEAVLLVNPRDPQLRGEVDDKYQYSCQNMDNQVHGWISFNPPVGIWQITPSDEFRTGGPHKQNLTSHVGPTMLAMFHSGHYAGLDLVPKIRAGEPWKKVFGPVFIYVNSGSVGDDPLWLWEDAKIQMMTEVQNWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVSTDLIPANGAFVGLAPPGDIGSWQRECKDYQFWTRADENGFFTISNVRHGDYNLYAWVPGFIGDYKLDDLMKIASGSYNEVGELGYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYVNKLYINHPDRFRQYGLWDRYTELYPDGDLVYTIGASDYSKDWFFAQVPRRKQDNTYQGTTWQIKFELDNLIKDSTYKLRVAIASATLAEVQVRVNDPNSRRPVFTTGLIGRDNSVARHGIHGIYRLYHVNIPGSLLVHGTNTIFLTQPRCTSPFQGIMYDYIRLECPPCF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02619 634 Gene3D - 8 304 IPR014718 GO:0030246
Bva06g02619 634 SUPERFAMILY Starch-binding domain-like 330 408 IPR013784 GO:0030246
Bva06g02619 634 CDD RGL4_M 331 430 IPR029413 -
Bva06g02619 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Bva06g02619 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Bva06g02619 634 Pfam Polysaccharide lyase family 4, domain II 354 424 IPR029413 -
Bva06g02619 634 Gene3D - 328 425 - -
Bva06g02619 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Bva06g02619 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Bva06g02619 634 CDD RGL4_N 6 293 - -
Bva06g02619 634 CDD RGL4_C 442 629 - -
Bva06g02619 634 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bva06g02619 634 Gene3D - 438 629 - -
Bva06g02619 634 Pfam Rhamnogalacturonate lyase family 13 200 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02619 Bva-Chr6 16553082 16558845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02619 1 632 Polysaccharide Lyase AT1G09910 70.253 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02619 K18195 - gmx:100814185 1157.51