Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02610 atgAACATGGGACACCATGAACATGATTTCTTAGAGGAACTACTAGCTCTAAGAAGAGAAACATGTGACACCATTCCAACAGAGGGAAACCAATTCTTTCCCAGTAATGGCTGGAGTTTTGATTGTTATGATCAGAACTCTGTGGCTTTTTCTTCCTGTCAAGAAATTCCCCAGAGTTACAACAATTACGCGTTCGATGAAATGTATGCTTCCCTTCTTGATGAATTCTCTGCACCACCGATTGTTGACTCGTCATCCTACAACACCCAAGATACTCCTCCACTTGATACCCCACCTTTTCTGGCTCAAGAAGATTACCAGTTGTGCAtgatggaagaagaagatcaTGGTTTTCATGGGGAAGAGCTTCACCTGCAACCCACGTGTAAACTAGAGCCAAGTCAATCCCCTGAAATGCCAGTTTTCAACAATGGTGCgtgttttgaaagaaaaactcGACCTAGGAAGCTGCAGGGGCAGCCCTCCAAGAATCTAATGGCtgagaggagaagaagaaagaggttAAACGATCGCCTCTCCATGTTAAGATCAATTGTCCCCAAGATAAGTAAGATGGACAGAACATCCATACTAGGAGACACTATAGATTACATGAAGGAACTCTTGGAGAAGATCAACCATTtgcaacaagaaaaagaattagattCAAACATGATGGGCATTTTAAAGGATGCAAAGCCAAATGAAATCTTAGTTAGAAATTCACCCAAGtTTGATGTGGAGAAGAGGAATGTGGACACCCGGGTTGAAATCTGTTGTGCAGGGAAGCCAGGCCTATTGCACTCAACGGTAAACACCTTGGAAGCATTAGGTCTCGAGATTCAACAATGTGTTATCAGCTGTTTCAATGATTTTACAATGCAGGCTTCTTGCACAGAGGAATTGGAGCACAGGACAGTGCTGGGTTCTGAAGATATAAAGCAAGCATTATTTAGAAGCGCGGGTTATGGAGGAAGATGTTTGTG 986 0.3955 MNMGHHEHDFLEELLALRRETCDTIPTEGNQFFPSNGWSFDCYDQNSVAFSSCQEIPQSYNNYAFDEMYASLLDEFSAPPIVDSSSYNTQDTPPLDTPPFLAQEDYQLCMMEEEDHGFHGEELHLQPTCKLEPSQSPEMPVFNNGACFERKTRPRKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINHLQQEKELDSNMMGILKDAKPNEILVRNSPKFDVEKRNVDTRVEICCAGKPGLLHSTVNTLEALGLEIQQCVISCFNDFTMQASCTEELEHRTVLGSEDIKQALFRSAGYGGRCL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02610 328 CDD ACT_UUR-ACR-like 254 295 - -
Bva06g02610 328 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Bva06g02610 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 328 - -
Bva06g02610 328 PANTHER DNA BINDING PROTEIN 6 328 - -
Bva06g02610 328 SMART finulus 165 214 IPR011598 GO:0046983
Bva06g02610 328 Gene3D - 152 224 IPR036638 GO:0046983
Bva06g02610 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Bva06g02610 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Bva06g02610 328 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02610 Bva-Chr6 16474699 16476521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02610 92 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 56.198 1.54e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g02610 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02610 - - gmx:100814388 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02610 06 16474699 16476521 Bva06g02610 06 16474699 16476521 ECH