Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02608 ATGTCTCCGCCGCCGCTGCTCGGCATAGGAGAAGAGGAAGGTCAAAGCAATGTCACTTTATTGGCTTCCTCAACTTCCATGGAAAGTGTTTGCCGAAACAACCCAGAATTAAAAGAACGCAATTACATGGGATTATCTGATTGTTCTTCCGTGGATAGCTCCTTTCCGTCTTTATCAGATgagaataaaagtaatctgAACCTGAAAGCAACGGAACTCAGGCTTGGGCTTCCTGGATTTCAGTCTCCTGAAAGGAACTCTGATATCTGCTTAAGAAACTCAACTAAATTGGATGAGAGGCCTTTGTTTCCTTTGCATCCTTCAACTGACGATCACCATTCGTCATCAAAGACTGCCATTTTGGGTAACAAAAGAGGTTTCTCTGATGCTATGAGTGGGTTCTCAGAGGGGAAATTTCTTGTTGATTCAGAGGTCAATACTATATTGTCACCTAGGCCTACTCCTAATGTAGGATTGAAAGCTGGTTCTATACTTGAGAACCTTGGGACTCAGCAAGTCAAAGCAAAAGAAGTACCACCAGCAAAGGTGGCAGATGAGAGGCCTCAAGCCAATGAAACCAGACCAAATCTTCATGGTTCTGCAACTACTAATAGCAGTGCACCAGCTACCAAGGCGCAAGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAAAAATTCTTTGGCCACTACTTCAAAGAATAATGAAGAAGTAGATGGAAAAGCCGGGTCTGGTCCGCTGTTCATCAAGGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGACCTGAGGAATTATTTCGTTTATCCAGAACTGTCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCATcgTGATTTCAGGTCAATGTGGATCTCATGGAACTCTGGGTAGGGAGATGCTGAATGAAAGCAAGCTGAAAGATCTACTTCATGGGTCAGAATATGTTCTTACTTACGAGGACAAAGATGGAGACTGGATGCTTGTTGGCGATGTTCCCTGGGAGATGTTTATTGATACATGTAGGAGGCTGAGGATCATGAAAAGTTCCGATGCCATCGGACTAGCTCCCAGAGCTGTGGAAAAAAGCAAGAGCAGGAACTA 1109 0.431 MSPPPLLGIGEEEGQSNVTLLASSTSMESVCRNNPELKERNYMGLSDCSSVDSSFPSLSDENKSNLNLKATELRLGLPGFQSPERNSDICLRNSTKLDERPLFPLHPSTDDHHSSSKTAILGNKRGFSDAMSGFSEGKFLVDSEVNTILSPRPTPNVGLKAGSILENLGTQQVKAKEVPPAKVADERPQANETRPNLHGSATTNSSAPATKAQVVGWPPIRSFRKNSLATTSKNNEEVDGKAGSGPLFIKVSMDGAPYLRKVDLRNYFVYPELSSALEKMFSCFTIVISGQCGSHGTLGREMLNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02608 369 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 363 IPR003311 GO:0005634|GO:0006355
Bva06g02608 369 Gene3D - 241 363 - -
Bva06g02608 369 ProSiteProfiles PB1 domain profile. 246 351 IPR000270 GO:0005515
Bva06g02608 369 SUPERFAMILY CAD & PB1 domains 244 350 - -
Bva06g02608 369 PANTHER AUXIN-INDUCED PROTEIN 23 363 - -
Bva06g02608 369 MobiDBLite consensus disorder prediction 193 211 - -
Bva06g02608 369 MobiDBLite consensus disorder prediction 173 211 - -
Bva06g02608 369 Pfam AUX/IAA family 71 360 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02608 Bva-Chr6 16460001 16464185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02608 250 359 B3 DNA Binding Superfamily AT4G23980 29.091 9.10e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva06g02608 AUX_IAA 3.8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02608 K14484 - gmx:100815447 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02608 06 16460001 16464185 Bva06g02608 06 16460001 16464185 ECH