Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02561 ATGATGGCGGTGAGTTCGGCCTGCAAAGATGGGAGCAAGATAGCAATGGAGAATGGCAAGTATGTGCGTTACACACCAGAACAGGTCGAGGCCCTTGAGAGGCTTTACCATGAATGCCCCAAACCCAGTTCTATGCGCCGCCAACAGCTCATCAGAGAATGTCCCATTCTCTCTAATATCGAGCCTAAGCAGATCAAGGTTTGGTTCCAGAATCGCAGATGTAGAGAGAAGCAGCGGAAGGAAGCGTCACGCCTGCAAGCTGTAAATAGGAAGCTGAATgcaatgaataaattattgatgGAGGAAAATGACAGATTGCAGAAGCAAGTTTCGCAGCTGGTTTATGAGAACGGCTTTTTCCGCCAACAGACACAAACTGCGACCCTTGCTACTACGGACACGAGTTGCGAGTCGGTGGTAACGAGCGGTCAGCGCCATTTGACACCTCAGCATCCACCAAGGGATGCCAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCAATTTCTCATGGATGCCCTGGAGTGGCAGCCCGTGCCTGCGGCCTTGTGGGTCTAGAACCGACGAGGGTTGCTGAAATCCTCAAGGATAGGCCATCATGGTACCGTGATTGCCGATCTGTGGACGTTTTAAATGCAATGTCCACTGGAAATGGTGGAACCATTGAACTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGCCCCAGCTCGTGACTTCTGGTTGCTGCGCTACACATCTCTTATGGAGGATGGTAGTCTTGTGATCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTACAATGCCGCCAGTGCAGCATTTTGTTAGAGCAGACATGCTGCCCAGCGGGTATCTGATTAGACCTTGTGAAGGAGGTGGATCAATCATACATATTGTTGATCATATAAATTTAGAGCCTTGGAGTGTACCTGAAGTATTGCGCCCACTTTATGAGTCATCAACGCTGCTTGCTCAAAAGACAACTTTGGCGGCCTTACGTCATTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAATGTGACAGGATGGGGAAGAAGGCCTGCAGCGTTACGTGCACTTGGTCAGAGGCTGAGCAAGGGCTTCAATGAAGCTGTGAATGGGTTTACAGATGATGGCTGGTCAATGTTAGAAAGTGATGGCATTGATGATGTCACCCTCCTTGTGAATTCATCTCCTAGCAAGACGATGGGGGCAAATATTGGTTATAACAATGGATTTCCTTCTATGGGCAGTTCTGTGCTATGTGCCAAAGCATCAATGTTATTACAGAATGTCCCTCCAGCAATTCTACTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGTAGTATTGATGCGTACTCAGCCGCTGCTATTAAAGCTGGTCCCTGTAGCTTGCCAGGAGCGCGAGTAGGAGGTTTTGGGACTCAGCTTATTCTTCCACTGGCCCACACAATTGAGCATGAAGAGTTCATGGAGGTCATTAAGCTTGAAAACATGGGCTATTATAGGGATGACATGACTATACCTGGTGACATTTTCCTCTTACAACTTTGCAGCGGAGTAGATGAGCATGCAGTTGGAACTTCTTCTGAACTAATTTTTGCTCCTATTGATGCATCTTTCTCTGAAGATGCACCCATTTTACCTTGTGGTTTTCGCATTATACCTCTTGATTCAGCTACGGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCATCTGCACTAGATGTTGGAACCACAGGAAACAAAGCAGCTGGTGACAATTCTGGTCATTCTGGGAGCACGAAATCAGTAATGACAATAGCCTTCCAGTTTGCATTTGAAGTCCACCTTCAAGACAATGTAACTACTATGGCCAGGCAATATGTCCGCAGTATTATTGCATCTGTTCAGAGGGTTGCATTGGCTCTCTCCCCTTCACAGTTTGGTTCTCAAAATGGTTTTCACCCACCTCCTGGCTCTCCTGAGGCGCAAACACTTGCTCGGTGGATCTGTCATAGTTATAGGTGCTATCTAGGGGTAGAACTACTAAAATGTGAAGGCAGTGAATCTATTCTCAAATCCCTTTGGCATCACTCAGACGCAGTCTTGTGCTGCTCTCTAAagGCACTGCCAGTTTTTACATTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACCTTGGTTGCTCTTCAGGACATCACTCTAGAAAAGATTTTTGATGACAACGGAAAGAAAACCCTGTGCTCTGAGTTCCCGCAGATACTGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTGTCCAGCATGGGGAGGCCAGTGTCCTATGAGAGAGCAGTGGCATGGAAAGTAATGAACGAGGAAGAAACTGCCCATTGCATCTGTTTCATGTTCATCAACTGGTCTTTTGTCTG 2519 0.4665 MMAVSSACKDGSKIAMENGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLNAMNKLLMEENDRLQKQVSQLVYENGFFRQQTQTATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRSVDVLNAMSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSLMEDGSLVICERSLNNTQNGPTMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHINLEPWSVPEVLRPLYESSTLLAQKTTLAALRHLRQISQEISQPNVTGWGRRPAALRALGQRLSKGFNEAVNGFTDDGWSMLESDGIDDVTLLVNSSPSKTMGANIGYNNGFPSMGSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARVGGFGTQLILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDEHAVGTSSELIFAPIDASFSEDAPILPCGFRIIPLDSATDAASPNRTLDLASALDVGTTGNKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQDNVTTMARQYVRSIIASVQRVALALSPSQFGSQNGFHPPPGSPEAQTLARWICHSYRCYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQILQQGFMCIQGGICLSSMGRPVSYERAVAWKVMNEEETAHCICFMFINWSFV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02561 839 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Bva06g02561 839 Coils Coil 75 116 - -
Bva06g02561 839 SMART START_1 163 373 IPR002913 GO:0008289
Bva06g02561 839 Pfam START domain 164 372 IPR002913 GO:0008289
Bva06g02561 839 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Bva06g02561 839 SMART HOX_1 17 83 IPR001356 GO:0003677
Bva06g02561 839 Gene3D - 198 380 IPR023393 -
Bva06g02561 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 839 - -
Bva06g02561 839 Pfam MEKHLA domain 698 838 IPR013978 -
Bva06g02561 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 839 IPR044830 GO:0003700
Bva06g02561 839 CDD homeodomain 20 80 IPR001356 GO:0003677
Bva06g02561 839 CDD START_ArGLABRA2_like 158 373 - -
Bva06g02561 839 ProSiteProfiles START domain profile. 154 368 IPR002913 GO:0008289
Bva06g02561 839 Gene3D - 12 86 - -
Bva06g02561 839 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Bva06g02561 839 SUPERFAMILY Bet v1-like 163 374 - -
Bva06g02561 839 CDD bZIP 72 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02561 Bva-Chr6 16199054 16205520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02561 16 839 Homeobox Transcription Factor Family AT4G32880 81.280 0.0 1409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva06g02561 START 1.4e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02561 K09338 - gmx:100815727 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02561 06 16199054 16205520 Bva06g02561 06 16199054 16205520 ECH