Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02558 ATGGAGTCACCAGAGTTCTTCCAGAACAGCTTTTGCCCACAATTCCCTTCTGATAACAAACCGACCACCACCCCTGGCGTTGGCGTTGCCGACCATTTCATCGTAGAGGACCTCTTCGACTTCCCCACCGATGACAACATCATCACAGACGGTGCCTTGGACTCCATTCCCGGCAATTCGGTTGATTCTTCTGTAACCGCCATTGACAGTTGCATTAATTCCCCGGCGTTTTCCGGGGGCGACACCAACTTTGTCGGTGACATTGGATGCCGGAATTTCCCTGACAGCCATTTCTCCAGTGACCTCTGTGTGCCGTGCGATGATGTAGCAGAGCTGGAATGGCTTTCCAATTTCGTGGAGGAATCGTTTTCAAGCGAGGACCTGCAAAAGCTGGAGCTGATATCTGGCATGAAAGCTCGAAACGACGAAGTAACAGAAAGCCGTGAATTTCAGCCCGAACAGAACCGAAACAACCCAATATTCAACCGGGAAGTGTCGGTTCCAGCCAAGGCTCGCAGCAAGCGGTCCCGTGGCCACCCATGCAACTGGACCACGCGCCTTGTCGTCCTCTCACCAAACACGTCATCTTCGGAGCAAGACGTCATCATTCCGACACCGGGAAAGAAAGAGGGGAAGCCAGCcccaaggaagaaagagagtGGCGACGGTTCCGGCGGAGACGGGCGCAAGTGTCTGCATTGCGCGACAGATAAGACGCCGCAGTGGCGAACCGGGCCTATGGGCCCTAAAACACTTTGCAATGCTTGTGGTGTGAGGTACAAGTCAGGCAGATTGGTGCCCGAGTACCGGCCTGCAGCGAGCCCAACATTCGTGCTAACCAAACATTCCAATTCGCATCGGAAAGTCTTGGAGCTCCGGCGCCAGAAGGAGTTGCTGAAGACCCACCAGCAACAGCAGCAACAATTTCTACAACACCAGAACATGATCTTTGATATGCCCAATGGCGATGATTACTTGATCCACCAACACGTGGGCCCCGATTTCAGGCAGCTCATCTA 1019 0.528 MESPEFFQNSFCPQFPSDNKPTTTPGVGVADHFIVEDLFDFPTDDNIITDGALDSIPGNSVDSSVTAIDSCINSPAFSGGDTNFVGDIGCRNFPDSHFSSDLCVPCDDVAELEWLSNFVEESFSSEDLQKLELISGMKARNDEVTESREFQPEQNRNNPIFNREVSVPAKARSKRSRGHPCNWTTRLVVLSPNTSSSEQDVIIPTPGKKEGKPAPRKKESGDGSGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLKTHQQQQQQFLQHQNMIFDMPNGDDYLIHQHVGPDFRQLI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02558 339 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Bva06g02558 339 PANTHER GATA TRANSCRIPTION FACTOR 1 339 - -
Bva06g02558 339 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Bva06g02558 339 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Bva06g02558 339 PANTHER GATA TRANSCRIPTION FACTOR 1 339 - -
Bva06g02558 339 MobiDBLite consensus disorder prediction 194 230 - -
Bva06g02558 339 PIRSF Txn_fac_GATA_plant 19 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva06g02558 339 Gene3D - 227 313 IPR013088 GO:0006355|GO:0008270
Bva06g02558 339 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Bva06g02558 339 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Bva06g02558 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 289 - -
Bva06g02558 339 MobiDBLite consensus disorder prediction 210 230 - -
Bva06g02558 339 MobiDBLite consensus disorder prediction 144 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02558 Bva-Chr6 16186136 16187789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02558 40 339 C2C2-Gata Transcription Factor Family AT5G25830 53.374 5.87e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva06g02558 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02558 - - zju:107420464 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02558 06 16186136 16187789 Bva06g02558 06 16186136 16187789 ECH