Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02548 ATGTCTACCATGTTGTCTGTCCACCTCTTTAAGAAGCGTTTGTTAGTGTTCACTCTGGTTCTTTATTTGCTCTTGAATTTAAATGGAGCCCAAGACAAAGCAGAGCCAGAGACCATGCCAGAGATTCCTCAACCCATCCGTCCAAACAAGGTAACTGTCATAGTAATCCTCTCAATAATGTTTGGGATATCATTTCTCCTACTTGCCTATATCAAGTTCTGCCGAAGCAGCCCTCTTGAGATTCTGAACCCAGGCACCCATCTCCAGAACATTCAAGGGCTTACTCGATCTGGGTCTAGATATTCTGGGATTGACAAGCAAGTGATTGAATCACTTCCATTTTTCAGGTTTTCTTCCCTCAAGGGATCAAAACAAGGACTAGAATGTGTTGTTTGCCTGTCCAAATTTGAAGATGCTGAACTTATCAGATTGTTGCCTAAGTGCAAGCATGCTTTCCACATGAGCTGTATTGATAAGTGGCTAGAAGGTCACACTAGCTGCCCTCTTTGCAGGTACAGGGTTGACCCAGGGGACATCAAGAACTTCACTTGTTCAATCAGCTCAAGGTACCTTAGAGttccttcaaatttaacaGAGGACCCAAATCTTGAAATCTTTGTTCAGAGGGAGCAAGATCATCAAAGTAACATTGAAAGCAGCTTTCGGAATGTGGACAGACAAGAACTGCTTATAGATCATGGAGGTGGGCTTAATCGGAAACCTTTGCACAAGTTTAATCACAAAATAGTTATCTCTGATTTTGTAACAAGGACCAGGTGGAGTGATCTTAATTCTTCGGACATTTTACTGTCCTTGAACACTGAGATGCTCAATGTTATGTCAAGCACGAGATTCTCCCCTTTGGAATCGCCTAAAATGGTAAAGTTCCTCAGGAGTTCAAGCCATCCAACTAGTTCCAACGAGGAAGACAATTCATTTGCTCTACTGAATCTTGGTGAGAAAAGATCCATGTCTGAGATTGCTAATGTTCCAAGGTTTGCGGAAATCAGCGGACACAACAGAATAAAAGAATCAATGGGATCTAGCAGAGAAGAGAGATTGAGGAGGATTTGGTTGCCAATTGTGCGACGCACGGTGCAATGGTTTGCCAGACGAGAAATAACCTCAACAGGATTACAACACAAACAATTGGCTGCAAACGTTTG 1166 0.4211 MLSVHLFKKRLLVFTLVLYLLLNLNGAQDKAEPETMPEIPQPIRPNKVTVIVILSIMFGISFLLLAYIKFCRSSPLEILNPGTHLQNIQGLTRSGSRYSGIDKQVIESLPFFRFSSLKGSKQGLECVVCLSKFEDAELIRLLPKCKHAFHMSCIDKWLEGHTSCPLCRYRVDPGDIKNFTCSISSRYLRVPSNLTEDPNLEIFVQREQDHQSNIESSFRNVDRQELLIDHGGGLNRKPLHKFNHKIVISDFVTRTRWSDLNSSDILLSLNTEMLNVMSSTRFSPLESPKMVKFLRSSSHPTSSNEEDNSFALLNLGEKRSMSEIANVPRFAEISGHNRIKESMGSSREERLRRIWLPIVRRTVQWFARREITSTGLQHKQLAANV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02548 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 289 - -
Bva06g02548 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 296 379 - -
Bva06g02548 385 PANTHER RING-H2 FINGER PROTEIN ATL4J 296 379 - -
Bva06g02548 385 CDD RING-H2_EL5_like 125 168 - -
Bva06g02548 385 PANTHER RING-H2 FINGER PROTEIN ATL4J 20 289 - -
Bva06g02548 385 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Bva06g02548 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 174 IPR013083 -
Bva06g02548 385 SUPERFAMILY RING/U-box 105 173 - -
Bva06g02548 385 Pfam Ring finger domain 125 168 IPR001841 -
Bva06g02548 385 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02548 Bva-Chr6 16121543 16123894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02548 33 370 C3H Transcription Factor Family AT2G20030 42.017 1.28e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02548 K10664 - gmx:100803881 402.134