LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g02547	ATGGCCAAGATCGCTCTCGGAACTGCCGCAGAGGCCGCCAAGCCTGACGTGATTCAGGCTCTGGTGGTCGAGTTCATCACCacctttctttttgtctttgcCGGTGTTGGATCAGCCATCACTGCTGATAAGCTGGGTGCAGATGCACTTGTGGGGTTGTTTGCTATTGCCGTGGCACATGCACTGGTGGTGGCTGTAATGATATCGGCCGGCCACATTTCCGGTGGGCACCTTAACCCGGCCGTCACCCTTGGACTCCTTGTTGGTGGCCACATCACGGTGATCCGTTCCATCCTGTATTGGATTGACCAATTATTAGCTGCAGCAGCCGCATCTGCTCTTCTTCAGTACCTCACAGGGGGACTGAGTGTTCCAGCTATTACGCTTGCAAGTGGAGTGGGGCCAGTTGAAGGCATAATTTGGGAGATAATCCTAACATTCTCTTTGCTGTTCTCGGTGTATGCGACGATGGTGGATCCGAAGAAAGGAGCATTAGGTGGGCTGGGACCAACACTGGTTGGTTTTGTGGTGGGGGCCAATATCTTGGCTGGTGGAGCATTCTCCGGAGCTGCTATGAACCCAGCAAGGGCTTTTGGGCCTGCTTTGGTTAGCGGAAACTGGACCGATCACTGGGTCTACTGGGTTGGACCCCTCATCGGTGGCGCCCTTGCCGGCTTCATCTACGAAAACTTCTTCATTGACAGATCTCGTGTTCTGGTTCCCCAAGATGAAGAAAACTACTA	743	0.5236	MAKIALGTAAEAAKPDVIQALVVEFITTFLFVFAGVGSAITADKLGADALVGLFAIAVAHALVVAVMISAGHISGGHLNPAVTLGLLVGGHITVIRSILYWIDQLLAAAAASALLQYLTGGLSVPAITLASGVGPVEGIIWEIILTFSLLFSVYATMVDPKKGALGGLGPTLVGFVVGANILAGGAFSGAAMNPARAFGPALVSGNWTDHWVYWVGPLIGGALAGFIYENFFIDRSRVLVPQDEENY	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g02547	247	Pfam	Major intrinsic protein	13	228	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PANTHER	AQUAPORIN-8	2	246	IPR034294	-
	Bva06g02547	247	ProSitePatterns	MIP family signature.	77	85	IPR022357	-
	Bva06g02547	247	Gene3D	Glycerol uptake facilitator protein.	2	241	IPR023271	-
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	141	159	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	59	83	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	211	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	96	115	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva06g02547	247	SUPERFAMILY	Aquaporin-like	13	238	IPR023271	-
	Bva06g02547	247	PANTHER	AQUAPORIN TIP4-1	2	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g02547	Bva-Chr6	16120170	16121542	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g02547	1	245	Major Intrinsic Protein MIP	AT2G25810	77.551	2.49e-125	354

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g02547	K09873		-	gmx:100811447	392.119

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g02547	06	16120170	16121542	Bva06g02547	06	16120170	16121542	ECH