Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02516 ATGCAAAAGGAGAAGGAAGGAAGCAAAGTGGTGGGCGCggatatggatatggatatggGTATGGAAGGTTCAAAGGAGGAAAAGCTACCTCCGGGATATCGATTTCATCCCACCGACGAAGAACTCATCACTTACTATCTCGTCAACAAGATATCAGATTCCACTTTTACAGGAAAAGCTATAGGTGATGTAGATCTCAACAAATCCGAGCCATGGGAGCTCCCAGGCAAGGCAAAGatgggagaaaaagaatggTACTTCTTCAGTCTTAGAGATCGGAAGTACCCAACGGGAGTGAGAACAAATCGAGCAACAAACGCTGGGTACTGGAAGACCACGGGAAAAGACAAAGAGATCTTTAACAATGTCACATCGGAGTTAGTTGGGATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCCCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATATCGCATTCACGCAAAATCCAGCCTCCGAACTAACAAgCGGGATGAATGGGTGGTTTGCCGGGTGTTTCAGAAGAGTGCTGGTGTAAAAAAGTACCCTTCCAACCACACAAGAGCAGTGAATCCTTATAGCCTAGAGATAGGTCCTAGCATGGTTCCACCACCATTGATGCAGCTGGGAGATCCTGTTGGAGGTCATTTCCTCTACGGAAGAAACTACACGAACAGTGCAGAGTTAGCGGAGATTGCTAGGGTTTTGAGAGGTGCGGGCGGATCAACTAGTGTCAATCTACCAATGCAATCCCCATTTAACTACCCAGTAACAGGAGGAGCTGGAGGATGCTTCACAATATCCGggttaaatttgaatctaggAGGAGGAGCAGCGACAACACAACCAGTTTTGCGGCCAATGCCAACACCGCCACCTCAGGCTCACCAGACACCTCTTGCTCATGCAATGACGACTCAACATGACCATGTCAGTTCTAACATGATGACAGCTTCTGAGAATTCAGGATATGTTACGGAAATGGGAAACGCAAACCCTCACAGCAATAGGTATATTGGCGTGGACCATTGTATGGATCTAGACAACTACTGGCCTTCCTACTG 1073 0.4483 MQKEKEGSKVVGADMDMDMGMEGSKEEKLPPGYRFHPTDEELITYYLVNKISDSTFTGKAIGDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNNVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHAKSSLRTNKRDEWVVCRVFQKSAGVKKYPSNHTRAVNPYSLEIGPSMVPPPLMQLGDPVGGHFLYGRNYTNSAELAEIARVLRGAGGSTSVNLPMQSPFNYPVTGGAGGCFTISGLNLNLGGGAATTQPVLRPMPTPPPQAHQTPLAHAMTTQHDHVSSNMMTASENSGYVTEMGNANPHSNRYIGVDHCMDLDNYWPSY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02516 357 ProSiteProfiles NAC domain profile. 29 178 IPR003441 GO:0003677|GO:0006355
Bva06g02516 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 354 - -
Bva06g02516 357 Pfam No apical meristem (NAM) protein 30 156 IPR003441 GO:0003677|GO:0006355
Bva06g02516 357 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 22 354 - -
Bva06g02516 357 Gene3D NAC domain 38 182 IPR036093 GO:0003677|GO:0006355
Bva06g02516 357 SUPERFAMILY NAC domain 17 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02516 Bva-Chr6 15943470 15945977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02516 18 357 NAC Transcription Factor Family AT2G24430 51.934 4.13e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva06g02516 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02516 - - gmx:100804931 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02516 06 15943470 15945977 Bva06g02516 06 15943470 15945977 ECH