Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02498 ATGTCTCGTGTGTATGTTGGTAACTTGGATTCAAGAGTTACCGAGAGAGAGCTTGAAGATGAATTCCGTCAATTCGGAGTTATACGGAGTGTTTGGGTTGCTAGGAGACCACCAGGTTATGCTTTTATTGACTTTGATGATCGTAGAGATGCGGAGGATGCTATCCGTGACATAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTagaggtggtggtggtggccGTGGAGGTGGTCGTGGTCGCTCTGGTGGATCTGATTTGAAATGTTACGAGTGTGGCGAGCCTGGTCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGGAGACGTCGCAGCCGCAGTCCACCTCGATTCCGTAGGAGCCCCAGTTATGGGCGAAGGAGTTACAGTCCTCGCGGGCGGTCACCTAGGCGCCGCAGTTTGTCACCTCGTGGACGCAGCTATAGCAAGTCACCTTACCGTGGACGTGAGGAGCCACCGTATGCTAATGGGAATGGACTAAGGGAGCGACGCCGAAGCAGAAGTTA 542 0.5018 MSRVYVGNLDSRVTERELEDEFRQFGVIRSVWVARRPPGYAFIDFDDRRDAEDAIRDIDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSKSPYRGREEPPYANGNGLRERRRSRS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02498 180 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Bva06g02498 180 ProSiteProfiles Zinc finger CCHC-type profile. 92 107 IPR001878 GO:0003676|GO:0008270
Bva06g02498 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Bva06g02498 180 MobiDBLite consensus disorder prediction 65 180 - -
Bva06g02498 180 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Bva06g02498 180 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 172 - -
Bva06g02498 180 MobiDBLite consensus disorder prediction 97 112 - -
Bva06g02498 180 Gene3D - 87 145 - -
Bva06g02498 180 Gene3D - 1 73 IPR012677 -
Bva06g02498 180 CDD RRM_SRSF3_like 3 71 - -
Bva06g02498 180 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676|GO:0008270
Bva06g02498 180 SMART rrm1_1 3 69 IPR000504 GO:0003723
Bva06g02498 180 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 172 - -
Bva06g02498 180 SUPERFAMILY Retrovirus zinc finger-like domains 85 109 IPR036875 GO:0003676|GO:0008270
Bva06g02498 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02498 Bva-Chr6 15853312 15856789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02498 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 3.11e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02498 K12896 - gmx:100796961 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02498 06 15853312 15856789 Bva06g02498 06 15853312 15856789 ECH