Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02486 ATGGATGAATATTCTGGTAAAAGAGCCAACGATGGGGTAGTAGTCCCTAGAAAGAGAATGACTCATGTGTTTAGAGATACTGCTAATACTAGGGATCAAAATGGTCAAGTGTGCAGCCGACTTGGTTGCAGTAGCAGAGTCAACACTCCTAAAGGTGCTCAAATTGGTTATTCTGAGAAAGGCAAATCTTTGAGGTCTTCTGTCAGACCGTCTTCAAAAGGGAAGGAAGCAATTGGAAGTTCCTCTAGAACTGTCTCAGGAACTAATAACCCAGAAAAATCCCTCACTGAGTCTAGGAAAACATTATCCTCTCGGTTAGAAACAGGTTCATCTGAAACAAGCAGCGTACAGGATGATCCACTAGTTTCAGAGCTCATCCCTCAACCAGAAAAAACTCAGAGGGGGCTTCAAGGTGAACTGGAAAATACAGAGTCCAGTAATACATTGCTGATGGAAGTGGGAAGCTCTAGTGTATCAAATACAAATACGAGATCTCGGAGGAACTTCCATCAAAAGCCTGGATTGCGTGGTCAAGAAGTTAAAAGCACTGGCCCATTAACGCGTGGTGGTAGCAGTAGTTATGGTTTGAGGAACCTGCGGTGCAACTCTATATCCGATGCCATCCCAGCTGGCTGTTCTTCATCAGATTCAAGCCTCAATAGAAGAAAGGATATGATAAAAAAGCGATACTGTGGAGGAGAAAGTAGTTCTACTGGTAGAGGGAAGAAGATGGTTGGGTCTCCATTGGAAGGACAGAATTCTGGTTCGAGAAATGGCAAATCCATCTCTGATTCAAGAAGATCCAGAAATATTCCTGCTCACAGGGACAACAACATTGTATCAGTTAGAACTCGAAGATCAGTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCTAGGAAATGAAAGCCCCGTGTCATCGAATGACTCCCCAATCATGATACCACCTCTGCCTCATTCTGGTGACCTTACCACTCCTGGTTTATCACTTCATACTTCTTCAGACACTCCTTTAAGTCGTCCAAGCTCTTTTGGTAGACCGAGTACTAGCGTTGAACAGTTACGTGGAGTTATCCCTCCCTCTCCTGCAGAATATGGCATCACTCGTTCATTAATAAACCGGGACAGCTTTAGGCGCTACAACATGGATGGTATTGCAGAGGTACTATTGGCACTTGAGAGGATTGAACAAGATGAAGATCTAACACATGAGCAAATTCTTTTACTGGAAACCAGCCTGTTCCTTAATGGATTAAACTTCTATGATCAGCATAGAGATATGCGGCTGGATATTGATAACATGTCATACGAGGAGCTATTAGCTCTAGAAGAGAGTATGGGTAGTGTGAGCACGGCCTTAACTGAGGAAGAGTTGTCAGAATGCCTGAAGAGAAGTATTTACCAGTCTGCACATTCAGAAGATGCAACTGAGAGTTGCAATGAGGATAGGGATGATATCAAATGCTGTGTCTGCCAGGAGGAATATGTGGTAGGAGATGAAGTGGGAAGTTTGCAGTGCGAGCATAGGTATCATGTGGTTTGCATACAGCAGTGGCTGCGATTGAAGAATTGGTGTCCTATATGCAAAGCATCGGCAGCACCATCATCAAATTCATCTTCACCACCTTG 1628 0.4404 MDEYSGKRANDGVVVPRKRMTHVFRDTANTRDQNGQVCSRLGCSSRVNTPKGAQIGYSEKGKSLRSSVRPSSKGKEAIGSSSRTVSGTNNPEKSLTESRKTLSSRLETGSSETSSVQDDPLVSELIPQPEKTQRGLQGELENTESSNTLLMEVGSSSVSNTNTRSRRNFHQKPGLRGQEVKSTGPLTRGGSSSYGLRNLRCNSISDAIPAGCSSSDSSLNRRKDMIKKRYCGGESSSTGRGKKMVGSPLEGQNSGSRNGKSISDSRRSRNIPAHRDNNIVSVRTRRSVSGHARGRLSSLGNESPVSSNDSPIMIPPLPHSGDLTTPGLSLHTSSDTPLSRPSSFGRPSTSVEQLRGVIPPSPAEYGITRSLINRDSFRRYNMDGIAEVLLALERIEQDEDLTHEQILLLETSLFLNGLNFYDQHRDMRLDIDNMSYEELLALEESMGSVSTALTEEELSECLKRSIYQSAHSEDATESCNEDRDDIKCCVCQEEYVVGDEVGSLQCEHRYHVVCIQQWLRLKNWCPICKASAAPSSNSSSPP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02486 542 SMART ring_2 488 528 IPR001841 -
Bva06g02486 542 MobiDBLite consensus disorder prediction 27 52 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 325 350 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 60 121 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 135 168 - -
Bva06g02486 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 534 IPR013083 -
Bva06g02486 542 Pfam Ring finger domain 487 529 IPR001841 -
Bva06g02486 542 MobiDBLite consensus disorder prediction 294 310 - -
Bva06g02486 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 533 IPR045191 GO:0061630
Bva06g02486 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 533 - -
Bva06g02486 542 SUPERFAMILY RING/U-box 482 533 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 1 196 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 226 357 - -
Bva06g02486 542 MobiDBLite consensus disorder prediction 1 26 - -
Bva06g02486 542 ProSiteProfiles Zinc finger RING-type profile. 488 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02486 Bva-Chr6 15803746 15807596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02486 367 532 C3H Transcription Factor Family AT2G15530 42.169 4.95e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02486 - - gmx:100787213 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00278 10 3694603 3698902 Bva06g02486 06 15803746 15807596 BWGD