Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02479 ATGCCAGGCCTAACGTGCAATGCTTGCAACAAAGAATTCGTGGACGATGCAGAGCAAAAGTTCCATTATAAGTCCGAGTGGCACCGCTACAACCTTAAGCGCAAGGTGGCTGGAGTTCCTGGGGTGACAGAAGCACTATTTCTGGCTAGACAATCTGTTCTTGCTCAAGAGAAAGATAAATCGAATGAAACCCCCATGCTCTATAGTTGTGGCCTATGTGGAAAAGGGTATAAAAGCTCTAAGGCTCATGCTGAGCATCTTAAATCCCGTGGTCATTTGATGCGGGCCTCTCAAGGAACTAATCCTTCAGATGAAAAGGCAATAATCAAGCCACTTCCACAACGTGTTGCAAATAGACCTCCTCCAAGAAGAGAGGTGGAAAATGCTGAAAGTGAGGAAAGTGAAGATGAATGGGAGGAAGTTGATCCCCAAGAGGATTTGGTTAATGATGCCACAAAGTCCTTGACTGCTTTGAATGTGGATGAGCATACTTCCAATGTTGATATGGATGCAGATGACGACGGTGATGATTATGAGGAGTTGGACCCATCCAGTTGCTTTATGTGTGATCAAGATCATGATACCATAGAAAGCTGCATGGTTCATATGCACAAGCAGCATGGATTCTTCATTCCTGATGTTGAGTATTTGAAGGATCCAGAAGGTCTCCTTACTTATCTTGGTCTTAAGGTCAAGAGGGATTATATGTGCCTGTACTGCAATGATAGACGTCATCCTTTCAGCAGCTTGGAAGCAGTTAGGAAGCACATGGCGGCAAAAAGTCACTGTAAAGTGCACTATGGTGACGGTGACGATGAGGAGGAGGCAGAGTTGGAAGAATTCTACGACTATAGCAGCAGTTACATCGATGAGCAAGGCAAGCAGCTGGTTGCATCAGGTGATATGGCCAATAATGTAGAACTTGGTAGTGGTGGATCTGAGATTATCATCACTATGAAATCTGATGACGGGATACTGACCAAAACCCTTGGTTCCCGTGAATATTTGCGTTATTATCGTCAGAAACCTCGGCCATCGCCTTCAAATAATATGGCCATTACTGCTGCATTAGCTTCAAGgtACAAGAGCATGGGTTTGGCCACCGTCCAATCAAGGGAGCACATGGTGAGATTGAAAGTActgaaggaaatgaagaggTCTGGTGTGGAGACTATGCGTACTAAAATAGGGATAAAGAATAATGTTATCCGGAACCTGCCCAAGAATGTCCCATATTA 1238 0.4378 MPGLTCNACNKEFVDDAEQKFHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKDKSNETPMLYSCGLCGKGYKSSKAHAEHLKSRGHLMRASQGTNPSDEKAIIKPLPQRVANRPPPRREVENAESEESEDEWEEVDPQEDLVNDATKSLTALNVDEHTSNVDMDADDDGDDYEELDPSSCFMCDQDHDTIESCMVHMHKQHGFFIPDVEYLKDPEGLLTYLGLKVKRDYMCLYCNDRRHPFSSLEAVRKHMAAKSHCKVHYGDGDDEEEAELEEFYDYSSSYIDEQGKQLVASGDMANNVELGSGGSEIIITMKSDDGILTKTLGSREYLRYYRQKPRPSPSNNMAITAALASRYKSMGLATVQSREHMVRLKVLKEMKRSGVETMRTKIGIKNNVIRNLPKNVPY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02479 412 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Bva06g02479 412 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Bva06g02479 412 MobiDBLite consensus disorder prediction 149 163 - -
Bva06g02479 412 MobiDBLite consensus disorder prediction 130 145 - -
Bva06g02479 412 MobiDBLite consensus disorder prediction 84 177 - -
Bva06g02479 412 SMART c2h2final6 68 92 IPR013087 -
Bva06g02479 412 SMART c2h2final6 184 207 IPR013087 -
Bva06g02479 412 SMART c2h2final6 4 28 IPR013087 -
Bva06g02479 412 SMART c2h2final6 235 262 IPR013087 -
Bva06g02479 412 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Bva06g02479 412 Pfam C2H2 type zinc-finger (2 copies) 186 287 IPR041661 -
Bva06g02479 412 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Bva06g02479 412 PANTHER ZINC FINGER PROTEIN-RELATED 1 412 - -
Bva06g02479 412 SUPERFAMILY beta-beta-alpha zinc fingers 64 98 IPR036236 -
Bva06g02479 412 PANTHER ZINC FINGER PROTEIN 622 1 412 IPR040025 -
Bva06g02479 412 SUPERFAMILY beta-beta-alpha zinc fingers 171 287 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02479 Bva-Chr6 15770089 15772334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02479 1 412 C2H2 Transcription Factor Family AT4G31420 66.827 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g02479 zf-C2H2_2 4.6e-27 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02479 K14816 - zju:107420801 657.136