Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02451 ATGCACCTTAAATCGGCGCAATCATCGTTTCGCGATCGGACACTGGAATTTCAGAGCATAGCGGAGAGGCTAAAGAAATCAGTCTCATCGGGATCAGGGCCAAATGGACCAAGTAGTAGTTCGAGATCGGAGGAACAGCGATCTGCTGTTGCACTTCAGTCAGAGTTTAATAGGAGGGCTTCCAAGATTGGATATGGGATTCATCAGACGTCACAGAAGCTTGTTAAGCTGGCCAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTTACAGCAGTTATTAAGCAAGATATTACTGCAATGAATTCTGCTGTTGTGGATCTTCAGCTAATCTGCAACTCTAGAAATGAGAGTGGGAATATCTCTAGTGACACAACTAGTCATTCAACCACAGTCGTGGATGACCTAAAAAACCGATTGATGAGCACCACAAAAGAGTTTAAAGAAGTCCTGACCATGCGAACAGAGAATTTGAAAGTCCATGAGAACAGAAGACAGTTGTTTTCCTCTACTGCTACCAAGGACTCTGCAAATCCTTTTGTTCGTCAACGTCCATTGGCTTCAAGGGCAGCTGCCAGTTCTTCTAATGCCCCTGCTCCTCCATGGGCTAGTGGGTCACCATCTTCTTCTCAGTTATTTCCCAAGAAACAGGTTGATGGGGAGAGTCAACCATTGCTGCAACAGCACGctcaacagcagcagcaattAGTTCCGCTGCAAGACAGTTATATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCTACTATTCATGAACTGAGCAACATCTTTAACCAATTGGCAACACTTGTTTCTCAACAAGGAGAGATTGCTATCAGGATTGATGAGAACATGGATGATACATTGGCAAATGTAGAAGGGGCCCAGGGGGCGTTGTTGAAGTACCTCAATAGCATATCTTCTAATAGGTGGCTGAtgatcaagattttttttgtattaatttttttcctcatggttttcctattttttgtGGCATA 1022 0.4159 MHLKSAQSSFRDRTLEFQSIAERLKKSVSSGSGPNGPSSSSRSEEQRSAVALQSEFNRRASKIGYGIHQTSQKLVKLAKLAKRTSVFDDPTMEIQELTAVIKQDITAMNSAVVDLQLICNSRNESGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTATKDSANPFVRQRPLASRAAASSSNAPAPPWASGSPSSSQLFPKKQVDGESQPLLQQHAQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02451 340 SUPERFAMILY t-snare proteins 53 303 IPR010989 GO:0016020|GO:0016192
Bva06g02451 340 Gene3D - 51 303 - -
Bva06g02451 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Bva06g02451 340 PANTHER SYNTAXIN-32-LIKE 2 339 - -
Bva06g02451 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva06g02451 340 SMART tSNARE_6 243 310 IPR000727 -
Bva06g02451 340 MobiDBLite consensus disorder prediction 169 238 - -
Bva06g02451 340 MobiDBLite consensus disorder prediction 171 185 - -
Bva06g02451 340 Pfam SNARE domain 284 336 IPR000727 -
Bva06g02451 340 PANTHER SYNTAXIN 2 339 IPR045242 -
Bva06g02451 340 MobiDBLite consensus disorder prediction 195 238 - -
Bva06g02451 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Bva06g02451 340 CDD SNARE_syntaxin5 251 329 - -
Bva06g02451 340 MobiDBLite consensus disorder prediction 25 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02451 Bva-Chr6 15659121 15662688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02451 1 340 SNARE and Associated Proteins AT3G24350 65.014 1.43e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02451 K08490 - gmx:100811494 476.478