Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02445 ATGGATGTTCTCTCACCTGAACTATATCCTGAAGATCGAGTCGACACTTATCCATTGTTGATGGAGCAGCCAGGGCACTTGAACTACAGTCAGCAGACTCATCACATTATTGACATAACTGGAAGTACTGATGCTTCCACGTCTACCTCTCCTCATGATAGACATTTTAATGGCATAGATACATCACAACATGAAAGTGGACCTAGTAGTTCAAGATTACCTGTTTCTCAACCGTCACTTCCCCCCGCTAATATATCTAATGGATCAAATTCTAGGAATTCTTCGTCAGGTAGACGAGGGAATACCCGGCGACATAGGAGTCCAGTGAATTCTGGGTTATGGGTTTCTGTTGAACTAGTCCTCACAGTGAGCCAGATTGTTGCATCCATTGTTGTTTTGTCTTTGTCAAGACACGAGCATCCACAGACTCCATTGTTTGCATGGATTCTGGGTTATGCAATTGGATGTGTTGCTATTCTCCCTCTGCTTTATTGGCGTTATTATCATCACCGCCAGATTCGTGAGCAAGATTCGTCTCAACGgcgtcaaacttctcctcgaATTAATGGTCCTTCAGGgcccttttctctttccatttctAGAAACAGTGAAGGTGAAGATCATCAGCCTGCTGCAGCACCCAGCAGCAATCAAGGTTCATGGTTGATGAATCCACGATTGAAGACGCTAATGGAATACTTCAAAATGGCCTTGGATTGCTTTTTCGCAGTATGGTTTGTTGTTGGCAACGTGTGGATCTTTGGAGGACATGCATCTGCTGATGAGGCTCCAAACTTGTACAGGTTATGTATAGTGTTTCTTACCTTTAGTTGTATTGGTTATGCTATGCCGTTCATTCTATGTGCAACAATATGCTGTTGTCTGCCTTGCATAATCTCCCTACTCGGGTTTAGAGAGGATCTTACAAACACCAGAGGGGCAACCCCTGAGTCCATTAATGCTCTTCCAACTTACAagttcaaaatgaagaaacataaaaaaaggGATGTAAGCAATTCGGATGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGTTTGATTTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAaagtatgaaaataatgaGGAGCTGAGAGAATTGCCCTGTTCTCATCTGTTCCACAAAGTGTGTGTAGACAAGTGGTTGAAGATAAATGCATTATGTCCTCTTTGCAAGAATGAAGTTGGTGAGAACGTAACAGGATCAATCTCTGGGGATAACGGCAACCAATA 1274 0.4105 MDVLSPELYPEDRVDTYPLLMEQPGHLNYSQQTHHIIDITGSTDASTSTSPHDRHFNGIDTSQHESGPSSSRLPVSQPSLPPANISNGSNSRNSSSGRRGNTRRHRSPVNSGLWVSVELVLTVSQIVASIVVLSLSRHEHPQTPLFAWILGYAIGCVAILPLLYWRYYHHRQIREQDSSQRRQTSPRINGPSGPFSLSISRNSEGEDHQPAAAPSSNQGSWLMNPRLKTLMEYFKMALDCFFAVWFVVGNVWIFGGHASADEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISLLGFREDLTNTRGATPESINALPTYKFKMKKHKKRDVSNSDVGEGGVVAAGTEKERLISGEDAVCCICLAKYENNEELRELPCSHLFHKVCVDKWLKINALCPLCKNEVGENVTGSISGDNGNQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02445 424 CDD RING-H2_RNF111_like 364 406 - -
Bva06g02445 424 MobiDBLite consensus disorder prediction 41 97 - -
Bva06g02445 424 MobiDBLite consensus disorder prediction 41 108 - -
Bva06g02445 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 424 - -
Bva06g02445 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 414 IPR013083 -
Bva06g02445 424 Pfam Ring finger domain 365 406 IPR001841 -
Bva06g02445 424 MobiDBLite consensus disorder prediction 176 195 - -
Bva06g02445 424 SMART ring_2 365 405 IPR001841 -
Bva06g02445 424 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 424 - -
Bva06g02445 424 SUPERFAMILY RING/U-box 356 411 - -
Bva06g02445 424 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02445 Bva-Chr6 15622425 15625924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02445 14 416 C3H Transcription Factor Family AT1G80400 54.054 5.66e-150 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02445 - - gmx:100778728 587.03