Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02435 ATGTCTCAGACTAACTGGGAAGctgataaaatGTTAGATGTTTACATCCATGATTACCTAGTAAAGCGGGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTCTCCTCGGATCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTTTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATTGCCAGGACAAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGCAAGggagcagcagcagcagcaacaacagCAGCCACAGCCCCAGCAGTCACCGCatcaacagcagcagcagcaacaacagCAACAACACATGCAAATGCAACAGCTTCTGTTCCAGAGACATGCTCAAcagcagcaacagcaacagcatcagcagcagcaacagcaacaACAGCAAccacagcagcagcaacagcagCCACCACCGCAGCAGCAGCAGCGAAGGGATGGGGCTCATCTCCTAAATGGCACTACAAATGGGTTAGTAGGAAATGACCCACTCATGCGGCAGAATCCTGGAACTGCAAATGCTTTAGCAACAAAGATGTACGAGGAAAGGCTTAAACTGCCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCAGGgCAAGTGTTGCATGGTGCTGCTGGTGGAATGTCTCCACAAGTTCAAGCTCGTAGTCAACAATTACCAGGATCTACTCCGGACATAAAGCCTGAGATCAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCTGAAGGATCTTTGATGGGAATTCCTGGATCTAATCAAGGTAGCAACAATTTGACTCTAAAAGGGTGGCCGCTTACCGGGTTGGATCAGCTACGTTCTGGTCTTCTGCAGCAGCAAAAGCCATTTATGCAGGCTCCTCAGCCCTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGCTTTTGCTTGCGCAACAGAATTTGGCATCACCATCTGGCAGTGATGAGTCCAGAAGACTCAGAATGCTATTGAATAACAGGAATATGGGCCTTAATAAGGATGGTCTTTCAAACCCTGTTGGTGATGTGGCTCCCAATGTAGGGTCACCTCTTCAAGCAGGTGGCCCTCTATTGCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAGTATcagcagcaacaacaacaacagcagaGCACCAATCCACAGCAGCAGCAACTTTCACAACTTCCTCTTTCAAATCAGCAAACGCAGACTTCAAATCATAACATGCATCAGCAAGATAAAGTGGGTGGAGCTGGTAGTGTCAATGTGGATGGTGGCATGTCAAACTCATTCCGAGGGAATGATCAGGTTTCCAAAAACCAGACtgggagaaagagaaaacaggCCGTATCTTCTTCTGGTCCCGCCAATAGCTCGGGAACAGCAAATACTGCAGGCCCATCTCCTAGCTCAGCACCATCAACTCCTTCGACTCATACACCAGGAGATGTGATGTCAATGCCTGCTTTGCCTCGTTGTGTTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACCGATGGATCTGGAACATTGACATCACCGTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGGTTTGTGGAGGATGGATCTCTTGGAGATAATGTTGAGTCTTTTTTATCCCATGATGATGCAGACCCTGGAGATCCTGGTCGTGGTATGGATGTAAGCAAAGGTTTCACATTTAATGAAGTAAATTCTGTACGAGCAAGCACAAGTAAAGTCGTATGTTGCCACTTCTCATCTGATGGAAAATTACTCGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGCACATAGATTCTCTAAAGCAAAAAACTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGCTTCAGTCCAAGTGTTGCACGTCTCGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGAAAATCCAGGGTACTCGCTTCGTACCTTTACAGGACATTCTGCATCTGTTATGTCTCTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGGGATGGTGAGATACGATATTGGAGTATCAACAATGGCAGCTGTGCTAGGGTCTCTAAGGGTGGCACTGCCCAGATGAGATTCCAACCCCGTTTAGGGAGGTACCTTGCTGCGGCTGCAGAAAATGTTGTCTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTACAGGGCCATACAAAGCCAGTACATTCTGTGTGCTGGGACCCTTCTGGGGAGTTCCTAGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACAGGAAGTGAAGGGGAATGTGTTCACGAGCTAAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACGTATCCGTCATTGTTGGTCATTGGCTGTTACCAGTCTTTGGAGCTGTGGAACATGACAGAGAACAAGACAATGACACTGTCTGCTCACGAAGGGCTTATTGCTGCATTGGCTGTGTCAACTTCAACTGGTTTGGTTGCTTCGGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTA 2720 0.432 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQPQQSPHQQQQQQQQQQHMQMQQLLFQRHAQQQQQQQHQQQQQQQQQPQQQQQQPPPQQQQRRDGAHLLNGTTNGLVGNDPLMRQNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGAAGGMSPQVQARSQQLPGSTPDIKPEINPVLNPRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTGLDQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLLLAQQNLASPSGSDESRRLRMLLNNRNMGLNKDGLSNPVGDVAPNVGSPLQAGGPLLPRGDTDMLMKLKLAQYQQQQQQQQSTNPQQQQLSQLPLSNQQTQTSNHNMHQQDKVGGAGSVNVDGGMSNSFRGNDQVSKNQTGRKRKQAVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPRCVSSSKPLMMFGTDGSGTLTSPSNQLWDDKDLELQADMDRFVEDGSLGDNVESFLSHDDADPGDPGRGMDVSKGFTFNEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHIDSLKQKTTLEEHSSLITDVRFSPSVARLATSSFDKTVRVWDVENPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLQGHTKPVHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTSTGLVASASHDKFVKLWK 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 874 906 - -
Bva06g02435 906 CDD WD40 618 906 - -
Bva06g02435 906 Gene3D - 751 906 IPR015943 GO:0005515
Bva06g02435 906 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 906 - -
Bva06g02435 906 ProSitePatterns Trp-Asp (WD) repeats signature. 683 697 IPR019775 -
Bva06g02435 906 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 906 IPR044716 GO:0003714
Bva06g02435 906 MobiDBLite consensus disorder prediction 89 185 - -
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 749 IPR001680 GO:0005515
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 707 745 - -
Bva06g02435 906 MobiDBLite consensus disorder prediction 256 270 - -
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 699 IPR001680 GO:0005515
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 789 829 IPR001680 GO:0005515
Bva06g02435 906 MobiDBLite consensus disorder prediction 425 462 - -
Bva06g02435 906 MobiDBLite consensus disorder prediction 425 536 - -
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 874 906 IPR001680 GO:0005515
Bva06g02435 906 Pfam WD domain, G-beta repeat 661 696 IPR001680 GO:0005515
Bva06g02435 906 Pfam WD domain, G-beta repeat 869 906 IPR001680 GO:0005515
Bva06g02435 906 Pfam WD domain, G-beta repeat 621 653 IPR001680 GO:0005515
Bva06g02435 906 Pfam WD domain, G-beta repeat 703 740 IPR001680 GO:0005515
Bva06g02435 906 Pfam WD domain, G-beta repeat 785 819 IPR001680 GO:0005515
Bva06g02435 906 SMART Lish 8 40 IPR006594 GO:0005515
Bva06g02435 906 SMART WD40_4 782 820 IPR001680 GO:0005515
Bva06g02435 906 SMART WD40_4 700 740 IPR001680 GO:0005515
Bva06g02435 906 SMART WD40_4 867 906 IPR001680 GO:0005515
Bva06g02435 906 SMART WD40_4 657 696 IPR001680 GO:0005515
Bva06g02435 906 SMART WD40_4 826 865 IPR001680 GO:0005515
Bva06g02435 906 SMART WD40_4 615 654 IPR001680 GO:0005515
Bva06g02435 906 SUPERFAMILY WD40 repeat-like 616 906 IPR036322 GO:0005515
Bva06g02435 906 PRINTS G protein beta WD-40 repeat signature 641 655 IPR020472 -
Bva06g02435 906 PRINTS G protein beta WD-40 repeat signature 683 697 IPR020472 -
Bva06g02435 906 PRINTS G protein beta WD-40 repeat signature 893 906 IPR020472 -
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 699 - -
Bva06g02435 906 MobiDBLite consensus disorder prediction 239 275 - -
Bva06g02435 906 Pfam LisH 10 36 IPR006594 GO:0005515
Bva06g02435 906 MobiDBLite consensus disorder prediction 470 529 - -
Bva06g02435 906 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Bva06g02435 906 Gene3D - 602 750 IPR015943 GO:0005515
Bva06g02435 906 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02435 Bva-Chr6 15581741 15589896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02435 701 905 Miscellaneous Gene Families AT5G08390 26.190 6.73e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva06g02435 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02435 - - gmx:100805628 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00331 10 4011296 4018867 Bva06g02435 06 15581741 15589896 BWGD