Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02427 ATGTCTGGGTCATCAATGGTCGGGGATGCGAGCACATGGTCTAGAGCGCTAGTCAAGGTCTCTCCTTATACTTTCTCGGCGATTGGTATCGCCATCTCTATCGGCGTCTCCGTTCTCGGTGCTGCCTGGGGGATTTATATTACTGGAAGTAGTTTGATCGGTGCTGCTATCAAAGCTCCTCGAATCACTTCGAAGAATCTTATCAGTGTTATATTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCCATTATCCTACAAACAAAGTTAGAGAGCGTTCCATCATCACAGATCTATGCACCCGAGTCTCTTAGGGCAGGCTATGCAATATTTGCCTCTGGAATTATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAAAATTCCTCACTTTTTGTGAAGATTCTTGTGATAGAGATCTTTGGCAGTGCGCTTGGGCTCTTCGGAGTAATCGTGGGAATCATCATGTCAGCTCAAGCAACATGGCCTTCAAAAGTTTA 545 0.4477 MSGSSMVGDASTWSRALVKVSPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSSQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02427 181 SUPERFAMILY F1F0 ATP synthase subunit C 22 90 IPR035921 -
Bva06g02427 181 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Bva06g02427 181 Gene3D - 23 177 IPR035921 -
Bva06g02427 181 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Bva06g02427 181 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Bva06g02427 181 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Bva06g02427 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva06g02427 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva06g02427 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva06g02427 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva06g02427 181 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Bva06g02427 181 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bva06g02427 181 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02427 Bva-Chr6 15541259 15543615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02427 1 180 Primary Pumps ATPases(2) AT2G25610 90.000 4.35e-109 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02427 K03661 - rcu:8284846 315.849