Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02401 atggaCCACAAACCTCGAGCTTCGCTTCAGTGCCTATTTAAAGAACTCGACTCCACTTTTCTAACCCTACTACCAATCTGTCTATCACTCGCTCTTCTACACGACTCTtcaaaccctaaccctagTAATACTCTTCCATCGAAAATTTTCTCGCAGAATATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTCCTGGACTACGATGAGGACGAAGATAAGGCGCCAGACTCCGTAGGAGCTAAAGTCAATGGCGAAGCTGCTAAGAAGGGTTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGGGCTATAGTGGACTCCGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATTCCCCAAGCAATCCTCGGGATGGATGTTATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCCGTCTTTGTTCTCTCATCATTGCAGCAGATTGATCCTGTTGCAGGCCAGGTTTCTGCACTTGTTTTGTGTCATACAAGGGAATTAGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACTTGCCTGATCTAAAGGTTGCAGTCTTTTATGGCGGTGTCAACATTAAAGTTCACAAGGAtctattgaaaaatgaatgCCCCCATATCGTTGTTGGAACGCCTGGAAGGATACTAGCCTTGGCTAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTTGACATGAGGAGGGACGTGCAAGAGATCTTCAAGATGACTCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGgaaatttatgttgatgacGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGTAAATTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTTGTTATTTTCGTGAAAAGTGTTAATAGAGCTGCTGAGCTGGACAAACTTCTAGTGGAGTGCAACTTTCCATCCATATGCATCCATTCTGGAATGTCCCAGGAGGAAAGGTTAAAGCGTTATAAAGGATTTAAGGAGGGGCATACAAGGATTCTTGTGGCTACAGATCTGGTTGGAAGGGGAATTGACATTGAGCGTGTCAACATCGTTATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCATAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGGCTCGCAATCACATTTGTTTCTTGTCCTTCTGATGTTGAAGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTTGATATAAAGCAACTTCCCGAGCAGATTGATACTTCTACCTACATGCCATCATA 1442 0.4175 MDHKPRASLQCLFKELDSTFLTLLPICLSLALLHDSSNPNPSNTLPSKIFSQNMGETKDEGYEEELLDYDEDEDKAPDSVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCPSDVEVLNNVQSRFEVDIKQLPEQIDTSTYMPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02401 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 80 475 - -
Bva06g02401 480 Pfam DEAD/DEAH box helicase 124 289 IPR011545 GO:0003676|GO:0005524
Bva06g02401 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 303 IPR014001 -
Bva06g02401 480 Gene3D - 95 311 IPR027417 -
Bva06g02401 480 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 80 475 - -
Bva06g02401 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 451 IPR027417 -
Bva06g02401 480 SMART ultradead3 118 319 IPR014001 -
Bva06g02401 480 CDD SF2_C_DEAD 316 445 - -
Bva06g02401 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 476 IPR001650 -
Bva06g02401 480 CDD DEADc_DDX39 98 305 - -
Bva06g02401 480 SMART helicmild6 355 436 IPR001650 -
Bva06g02401 480 Gene3D - 312 479 IPR027417 -
Bva06g02401 480 Pfam Helicase conserved C-terminal domain 329 436 IPR001650 -
Bva06g02401 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02401 Bva-Chr6 15427423 15432599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02401 54 480 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02401 K12812 - gmx:100808957 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00368 10 4195828 4200724 Bva06g02401 06 15427423 15432599 BWGD
Bva06g02401 06 15427423 15432599 Bva06g02401 06 15427423 15432599 ECH
Bva10g00368 10 4195828 4200724 Bva06g02401 06 15427423 15432599 ECH