Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02398 ATGGTACAAGCAAAGAAGTTCAGGGGCGTCAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGAAGGATATGGCTAGGCACGTTTGAAACAGCAGTGGCTGCGGCAAGGGCATATGACCAAGCTGCCATTTTGATGAATGGTCAAAATGCAAAGACTAATTTCCCTCCTGCATCAAAGAATCGACCTGATCAGGTTGATGACACTTCCTTATCTCCCAAGGCTCTCTCGGAGCTCTTGAGTTCGAAGCTCCGCAAGTGTTGCAAAGACCCATCTCCGTCCGTCACTTGTCTGAGGCTAGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAGGGAGCTGGACCACGCTCTGACTCCAACTGGGTCATGAGGGTGGAGCTTGGCAAGAAACAAGCACAAAAATTGGAGGGTAAGTCAACTTTATCACAAGGCTCACCGGATATTAGTGCTGTTGCTGGTGCTGGTGCTGGTGCTGGTGATGGAGAAGCTGCAAATTCTGATGGGGTTaatgaagaagaggaagatgcATTGCAGATGATTGAAGAGCTACTCAACTGGAACTATCCATGTATTTCAAGTAATCCTgaggaagaaaaagggaaCCTTCCATGTTA 638 0.4608 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRIWLGTFETAVAAARAYDQAAILMNGQNAKTNFPPASKNRPDQVDDTSLSPKALSELLSSKLRKCCKDPSPSVTCLRLDADNSHIGVWQKGAGPRSDSNWVMRVELGKKQAQKLEGKSTLSQGSPDISAVAGAGAGAGDGEAANSDGVNEEEEDALQMIEELLNWNYPCISSNPEEEKGNLPC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02398 212 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 201 - -
Bva06g02398 212 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Bva06g02398 212 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 MobiDBLite consensus disorder prediction 142 182 - -
Bva06g02398 212 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bva06g02398 212 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bva06g02398 212 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02398 Bva-Chr6 15419717 15420844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02398 1 197 AP2-EREBP Transcription Factor Family AT5G25390 57.789 3.72e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g02398 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02398 - - lang:109326202 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02398 06 15419717 15420844 Bva06g02398 06 15419717 15420844 ECH
Bva10g00372 10 4213994 4215260 Bva06g02398 06 15419717 15420844 ECH
Bva06g00984 06 8234431 8235664 Bva06g02398 06 15419717 15420844 ECH
Bva05g00703 05 3470467 3471532 Bva06g02398 06 15419717 15420844 ECH