Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02390 ATGGAACTTCGCTTAAGTTTGGCTCTCCCAACCCACAATCCAACTGACCAAACAAACCATGTCTTAGAGTCAAAACAGACTGTGGGTTCAAAAATATGGGCACAAAGTTGGCGTTTGGAAAGCAAAAAGCATGTCGAAAACAAGCGTCGCTTCCAAGATGCCTTTGGACGTTGTTTCAAGCCTGTGTCTTCAGACTCTCTACTGGTATGGAGCGGACAACCAAATGAAGAAGATGAGCGcagtggaaagaaaaaaaggaacatTGACACAACAAACAAgaatgatgaagaaaaacatCAAGTGGTGGGTTGGCCACCCATTAAAGcatggaggaagaagaaactccatctccatcatcatcatgGAGGCCAGATCAGAAATGATAGGGGGCCAGCAGGGAATGAAAGCAGAGGATCAAACTCCTTATACGTCAAGGCCAGGATGGAGGGAGTAGCAATAGGAAGGAAGATCGATTTGAGGCTCCATAGCTCTTATCAGGCTCTGACAAACACGTTGATTAGTATGTTTGCCAATGATCAAAAATTTCAGGAAGAAGGAGCAAGTTATAAACTCATCTATCAAGACAAAGAAGGGGACTGGCTGCTTGCTGGGGATGTTCCATGGCAATCCTTCATCGATTCCGTGCAGCGTTTGGAGATATTAAGGAATGGCAATGTAACTAGTTG 686 0.398 MELRLSLALPTHNPTDQTNHVLESKQTVGSKIWAQSWRLESKKHVENKRRFQDAFGRCFKPVSSDSLLVWSGQPNEEDERSGKKKRNIDTTNKNDEEKHQVVGWPPIKAWRKKKLHLHHHHGGQIRNDRGPAGNESRGSNSLYVKARMEGVAIGRKIDLRLHSSYQALTNTLISMFANDQKFQEEGASYKLIYQDKEGDWLLAGDVPWQSFIDSVQRLEILRNGNVTS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02390 228 MobiDBLite consensus disorder prediction 70 139 - -
Bva06g02390 228 MobiDBLite consensus disorder prediction 109 123 - -
Bva06g02390 228 Pfam AUX/IAA family 4 225 IPR033389 -
Bva06g02390 228 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 224 IPR003311 GO:0005634|GO:0006355
Bva06g02390 228 MobiDBLite consensus disorder prediction 76 102 - -
Bva06g02390 228 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 224 - -
Bva06g02390 228 ProSiteProfiles PB1 domain profile. 141 228 IPR000270 GO:0005515
Bva06g02390 228 SUPERFAMILY CAD & PB1 domains 137 220 - -
Bva06g02390 228 Gene3D - 136 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02390 Bva-Chr6 15383841 15385508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02390 82 226 B3 DNA Binding Superfamily AT1G19220 31.081 1.65e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva06g02390 AUX_IAA 3.4e-40 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02390 K14484 - gmx:100802759 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02390 06 15383841 15385508 Bva06g02390 06 15383841 15385508 ECH