Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02364 ATGGGAAGTGGAGATTGCTATGAAGGAATGACTTCTGGGAATAGCGAGGCCAAATGCTCAGAAACCACTGTCGAGATAAAGATTAAGACCTTGGATTCTAATACTTACACATTGCGAGTAGATAAATGTGTTCCTGTTCCAAGGTTGAAGGAAGAGGTTGCTATAGTAACTGGCGTGGTATCAGATCGGCAGCGCTTGATATGCCGTGGAAGAGTTTTGAAAGATGATCAGCTCCTCTCAGCTTATCATGTAGAAGATGGTCACACTTTACATTTAGTTGTTCGACAACCGATTCCATCACCATCAGAGAGCTTTGCTGATCATCCAGCCGCCAGTATTTCATCTAATGGCTCTAGCCAGTCATTCCCTATCATGGAAGATAATTCTGATCAAGATGTTGGATTCCTTCCAGATTGGACTCAGTTTTTCTCAAGTTTTCTCAACACTTTTGGAATGACTATCATTGGAAATGATTCTTCCTTGGAGGGGCTGTCAAGGGGGATTGGTTCTAGCGACTTTAGAGATTCCAGAAGAGAGCAATCTGAACTGGGTGCAGAAGCAGTTGGGTCTAGTTCTCAAAACAATAATTCCTCATCTGTTCCTTCAGTGCCTTCGCAGCCACCATTGCTTCCAGATTCTTTGACTACTTTGACCGAGTACCTCAGTCATTTAAGACGAGAATTTAGTTCCACTGTTAGAGGTCAAAGAAGTTCTGACTCTGCTGGAAGTAATGCAAGTGGTGAACCACATTCTAACACTGCTGGACCAAATGGGCTACCAAATGCAGCGTCATTGGCAGCAGTGCTACAGTCTACAAGACAATTATTAGTTGAACAAGTGGCAGAATTTCTGTTGAATCTCAGAAGACAGATGGAGGATCAAAGAAATGGGACTGGTTCATTAGGACAGATGAGTATCCAGTCAAATGCACGTAGATCAGGATTGCTTTTGCATCAAGTGGGTGCTTTGCTGCTTGAGCTTGGTCGAGTAGTTATGACCTTGCAAATGGGCCAGACAGGGGAAGATGCTGTGGTTAATGCTGGACCAGCACTCTTTATATCTAGTTCTGGTCCTAATCCCATAACGGTTGAGCTAGAAAACATTCAGCAACGAAGAAATTTGGGGGCAACCTttgttggttttggttttccCGCAAGGAATCTCGATGCAAGAATACGAACAGTAGGTTCAGTATTGCCAACTGGTGCACCTGAATCAGCTGCAGATATGGACTCTGTTGTTTCTGGTAGTGCTAGTTTCACAGCTACTGCTACAGTCTCTACAAACCCTTTGCACAGGGGCTCTCAATCTCAAATACGACCTATCAGGACTGTGAGAGTTATTAGAGCATTACCTGCCCAAATTAGACGCCCATCAAATTTGTCTCACAATTCAGTGGGAAGCCCGAATGGCTCAATGAGGCCGCCATCAACCACTGAGAACAACACAGTAGAGTCTAGAAGGCAGACGAATCCCAGAAATGCAGAACCAAGACAGAGCAATGTGTCTTCGTCTTCTGTACCAAATGCTGGGATTCAAAATGCTTCTTCAATTCAAGCTGAAGAGCATGTAACTACTGGTGCTTCGTCACGCCATTCTCCTACCCCTCCTTCTCCAAATTCAAAACGTCAAAAGAGGGaatg 1643 0.4376 MGSGDCYEGMTSGNSEAKCSETTVEIKIKTLDSNTYTLRVDKCVPVPRLKEEVAIVTGVVSDRQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPIPSPSESFADHPAASISSNGSSQSFPIMEDNSDQDVGFLPDWTQFFSSFLNTFGMTIIGNDSSLEGLSRGIGSSDFRDSRREQSELGAEAVGSSSQNNNSSSVPSVPSQPPLLPDSLTTLTEYLSHLRREFSSTVRGQRSSDSAGSNASGEPHSNTAGPNGLPNAASLAAVLQSTRQLLVEQVAEFLLNLRRQMEDQRNGTGSLGQMSIQSNARRSGLLLHQVGALLLELGRVVMTLQMGQTGEDAVVNAGPALFISSSGPNPITVELENIQQRRNLGATFVGFGFPARNLDARIRTVGSVLPTGAPESAADMDSVVSGSASFTATATVSTNPLHRGSQSQIRPIRTVRVIRALPAQIRRPSNLSHNSVGSPNGSMRPPSTTENNTVESRRQTNPRNAEPRQSNVSSSSVPNAGIQNASSIQAEEHVTTGASSRHSPTPPSPNSKRQKRE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02364 547 SUPERFAMILY Ubiquitin-like 21 101 IPR029071 -
Bva06g02364 547 MobiDBLite consensus disorder prediction 453 547 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 185 213 - -
Bva06g02364 547 SMART ubq_7 24 95 IPR000626 GO:0005515
Bva06g02364 547 Gene3D - 16 114 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 457 540 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 107 126 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 101 126 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 231 259 - -
Bva06g02364 547 PRINTS Ubiquitin signature 34 54 IPR019956 -
Bva06g02364 547 PRINTS Ubiquitin signature 76 97 IPR019956 -
Bva06g02364 547 PRINTS Ubiquitin signature 55 75 IPR019956 -
Bva06g02364 547 MobiDBLite consensus disorder prediction 228 259 - -
Bva06g02364 547 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 12 532 - -
Bva06g02364 547 MobiDBLite consensus disorder prediction 171 213 - -
Bva06g02364 547 ProSiteProfiles Ubiquitin domain profile. 24 97 IPR000626 GO:0005515
Bva06g02364 547 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02364 Bva-Chr6 15259490 15265239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02364 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.111 2.90e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02364 - K23390 dcr:108209703 346.28