Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02359 ATGGCTTACCACAATCATCATCTCTCTTCAGACCTTCCACTCCACCATTTCACAGaccaacagcagcagcagcagcagaacCAGCCTCTAAGCAATAGCACCTTGCGTACCATATTGCCGGACCAGCTGCACTCGTCTCCGGACCCATCCTCCAAACCCGGCTCCGATCCCCACCATCAACACCCTCTCCAAACCGCACCAAATTGGCTCAATAACGCCCTTCTTCGCACCCAGTACAGCGATGCCGCGAATACtgataacaataataacaacGCTGCCAACAACGGCACCAATTTCCTCAACCTCCACACCGCTGCCTCTGAGTCCACCGGAGCTGCTGCTTCCCAATCCTCAAGCCAATGGCTGTCGCGCCCGATCCTACACCGCAACCACAGTGAAGTCATCGACGACTCCATCATCGCCGGCACCACCCTGTCTCATGAATCCGCTGATTTGAAGACTACGAGCGGCAATCTTAATAACAAGAACGACGCAGTGGTGGTCGATAGTATCAACGGATTGGTTAACTGGCAGAATGCTAGGTACAAGGCGGAGATTCTAGCTCACCCACTGTACGAACAGCTGCTGTCGGCTCACGTGTCTTGCTTGCGAATCGCCACGCCGGTTGACCAGTTGCCCAGAATTGACGCTCAGCTCGCGCAGTCTCAGAATGTGGTCGCCAAGTACTCGGCCTTGGGACATGGTGCTCAGAGCATGGTTGGAGACGAGAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTTAAAGAACAACTGCAGCAACATGTCCGGGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAAATAGAGCAATCCTTACAAAGTGTAACAGGGGTTTCACCCGGTGAAGGTACAGGAGCAACAATGTCCGATGACGAGGACGACCAGGTAGATAGTGATGCTAATTTATTCGATGGTGGTTTGGATGGTCCAGACAGTATGGGATTCGGCCCTCTGATTCCAACTGAGACCGAGAGGTCTCTCATGGAGCGCGTAAGACAGGAATTAAAGCATGAACTTAAACAGGGTTATAAGGAGAAAATTGTGGACgtaagagaagaaattttgcGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACCACCTCTTTCCTTAAAGCTTGGTGGCAATCGCATTCCAAGTGGCCTTACCCTACGGAGGAAGATAAGGCAAGGCTGGTACAGGAAACTGGTTTGCAGTTAAAGCAGATTAATAACTGGTTCATTAATCAGAGGAAGAGGAACTGGCACACCAATCCTTCATCTTCTACTGCCTTGAAAAGCAAACGCAAAAGGTG 1337 0.4869 MAYHNHHLSSDLPLHHFTDQQQQQQQNQPLSNSTLRTILPDQLHSSPDPSSKPGSDPHHQHPLQTAPNWLNNALLRTQYSDAANTDNNNNNAANNGTNFLNLHTAASESTGAAASQSSSQWLSRPILHRNHSEVIDDSIIAGTTLSHESADLKTTSGNLNNKNDAVVVDSINGLVNWQNARYKAEILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGAQSMVGDEKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSVTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTETERSLMERVRQELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSFLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTALKSKRKR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02359 445 SMART KNOX1_2 180 224 IPR005540 GO:0003677|GO:0005634
Bva06g02359 445 Pfam KNOX2 domain 240 290 IPR005541 GO:0003677|GO:0005634
Bva06g02359 445 MobiDBLite consensus disorder prediction 425 445 - -
Bva06g02359 445 ProSiteProfiles ELK domain profile. 348 368 IPR005539 GO:0003677
Bva06g02359 445 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 54 445 - -
Bva06g02359 445 SMART ELK_2 348 369 IPR005539 GO:0003677
Bva06g02359 445 SUPERFAMILY Homeodomain-like 370 434 IPR009057 -
Bva06g02359 445 Pfam KNOX1 domain 182 223 IPR005540 GO:0003677|GO:0005634
Bva06g02359 445 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 445 - -
Bva06g02359 445 CDD homeodomain 371 432 IPR001356 GO:0003677
Bva06g02359 445 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677|GO:0006355
Bva06g02359 445 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677
Bva06g02359 445 SMART HOX_1 370 435 IPR001356 GO:0003677
Bva06g02359 445 Gene3D - 367 442 - -
Bva06g02359 445 SMART KNOX2_2 236 291 IPR005541 GO:0003677|GO:0005634
Bva06g02359 445 MobiDBLite consensus disorder prediction 40 65 - -
Bva06g02359 445 Pfam ELK domain 348 369 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02359 Bva-Chr6 15239560 15243178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02359 1 445 Homeobox Transcription Factor Family AT5G25220 65.944 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva06g02359 KNOX2 4.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02359 - - jre:109008224 664.07