Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02352 ATGGCTAGGCCACAACAGCGATACCGAGGCGTCCGACAAAGGCACTGGGGCTCCTGGGTCTCCGAAATTCGGCATCCTCTATTGAAGACTAGGATTTGGTTAGGTACTTTCGAAACAGCTGAAGATGCAGCTCGGGCCTATGACGAAGCCGCGAGGCTAATGTGTGGACCAAGGGCAAGAACTAATTTCCCCTACAACCCCAATGCGTCTCAATCATCAACTTCAAAGCTTCTCTCAGCAACTTTGACGGCCAAACTGCATAGGTGCTACATGGCTTCGCTGCAGATGACTAGACCATCATTAACGGAGCCTCAGAGAGTATCTCTTCCAAATGTTATCTCCACAAGCAAAAGCAACTTGGCTGAAAAATCCGGCGAAACAAATACAATGTTACCAGAGAAGAGACCATTAGCGGTGGCAGAGCAAGAGTCAGAAGCGAACTGGGTTGTCAATAAGGTTAAAGTGGAAAATATTCAGCAGTTTAAACCTCTTGAAGAAGATCATATAGAGCAAATGATAGCAGAGCTCCTTGATTATGGGTCTATTGAGCTCTGCTCTCTGTG 563 0.4689 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSTSKLLSATLTAKLHRCYMASLQMTRPSLTEPQRVSLPNVISTSKSNLAEKSGETNTMLPEKRPLAVAEQESEANWVVNKVKVENIQQFKPLEEDHIEQMIAELLDYGSIELCSL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02352 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 185 - -
Bva06g02352 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Bva06g02352 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 185 - -
Bva06g02352 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bva06g02352 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02352 Bva-Chr6 15199167 15200321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02352 1 187 AP2-EREBP Transcription Factor Family AT5G25190 65.775 1.16e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g02352 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02352 - - gmx:100804510 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00424 10 4478325 4479484 Bva06g02352 06 15199167 15200321 BWGD
Bva06g02352 06 15199167 15200321 Bva06g02352 06 15199167 15200321 ECH