Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02346 ATGACCGTGGAGACTAGAATGGGTGATCCCGGAGACCAGTTTCCTGTAGGAATGCGTGTTCTTGCCGTTGACGATGATCCTACTTGTCTCTTGGTGTTGGAAACTCTGCTTCGAAGATGTCAATATCATGTAACGACAACTAGTCAGGCAACAATGGCATTGAAGATGttgagagaaaacaaagataaGTTTGACCTGGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTCCCTGTCATaatgTTGTCTGCAAATGGTGACCCGAAGCTGGTGATGAAGGGAATAACGCATGGAGCTTGTGATTATCTACTGAAACCTGTTCGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAATTTGACGCGAAGGATCGGAACAAGGGCATCAGCCAAGATAAAGCTCATTCTGGTAGTGGCAATGGACTAAAGTCAGCAGGTACTGGAAATTCAGATCAAAATGgtaaaatgaacaaaagaaggaaggatcaagatgaagaagatgaggaAAATGAGAATGGTCATGAAAATGACGACCCCTCAACACAGAAGAAGCCTAGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATCGATAAGGCTGTGCcaaagaaaattcttgattTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTAGCAAGTCACCTCCAGAAATATAGGCTTTATCTGAAGAGAATTAGCTGTGTGACAAACCAACAGGCTCATATGGTGGCAGCTTTAGGTAGTGCAGATCCATCCTATTTGAGAATGAGTCCTCTGGGTGGGCTTGGACATTTACAAACACTGAACAGTGTTTTCAGATCCTTCCCACCTAGTGGCATGATTGGTAGGTTGAACACTCCTGCTGGTCTTGGTGTCCATGGGTTGCCTTCTTCTGGAATTCCTCCGTTGGGTCATGgccaaaatttaaacaattccATGAACGATCCTCTCAAGTTTCCGTCAACCATGGTTGGCGGTAATCAGAATGCTAGTGCAATTCAGGGAATGCCAGTGTCAATAGGGTTCAATCAATTACGACAAAATAAGGCCATTACTTCTGTTGAAGACCTGAACACTGGTATTGATGATAAAACGCTTTTGGCCATCCCAAATAAACTAACAGATCTAAGAGCTCGCACACCGCTTGTGGGTGTCACAAATAACTCTTTGATGTTAGAAACACACACTCAAGGCACACAAGGGAGTAGAGGATATGAGAATCTATCTTCAGTAGCTTCCCAACATCCAGAATTTCCTTTGCCTTTTCTGGATCATGGTAGGTGTAGTGATGATTGGTCAACTGCTGTGCAGTCATCTGGGATCCACCCAATTTCTTCTTACCCATCCACTCAGTGTTTTAGACAGTCTGCTATACCTTCTACAGATAACATGCATTTGAAACCCTTGCATGTGGGAAATCCAAGTGCTGCTTCATCCATTGATTCAGTGACAGATATGCCTTCCCAAGGACCCACTTTTACTAATACGCCTTCCCAAATATGCAGCAATGCCCTTTTTCAAGGTTGGGACGATCATAATCAGGATGATAATTTCCAGTCAATGAACTCTCTCATTCCTGTAAATGGTGCTGTTGGTCCCTCAGGGCATGCTCCCATAAACGACTTGGACTATAATTATGGTGACCTCTTACAGATGAAGCATGCTGAGGTAACGAAATCAGCTAAAGAGAAACCAAATCAGGGGTATATAATGGACCAACAGAAGGCACAACACAGTCGCACCACTAATAGCCTTGGTTCATTGGAAGATTTGGTCAGCGCAATGATGAAACAGGAACAAAATAAGGTGAAGTTAATGGAAGGAGAGTTCATGTGCGATAGTTACTCTGGTGGGACATCTATGTG 1952 0.417 MTVETRMGDPGDQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQATMALKMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDAKDRNKGISQDKAHSGSGNGLKSAGTGNSDQNGKMNKRRKDQDEEDEENENGHENDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVTNQQAHMVAALGSADPSYLRMSPLGGLGHLQTLNSVFRSFPPSGMIGRLNTPAGLGVHGLPSSGIPPLGHGQNLNNSMNDPLKFPSTMVGGNQNASAIQGMPVSIGFNQLRQNKAITSVEDLNTGIDDKTLLAIPNKLTDLRARTPLVGVTNNSLMLETHTQGTQGSRGYENLSSVASQHPEFPLPFLDHGRCSDDWSTAVQSSGIHPISSYPSTQCFRQSAIPSTDNMHLKPLHVGNPSAASSIDSVTDMPSQGPTFTNTPSQICSNALFQGWDDHNQDDNFQSMNSLIPVNGAVGPSGHAPINDLDYNYGDLLQMKHAEVTKSAKEKPNQGYIMDQQKAQHSRTTNSLGSLEDLVSAMMKQEQNKVKLMEGEFMCDSYSGGTSM 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02346 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Bva06g02346 650 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Bva06g02346 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 IPR045279 GO:0009736
Bva06g02346 650 CDD REC_typeB_ARR-like 20 134 - -
Bva06g02346 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 - -
Bva06g02346 650 SMART REC_2 18 130 IPR001789 GO:0000160
Bva06g02346 650 Gene3D - 199 262 - -
Bva06g02346 650 MobiDBLite consensus disorder prediction 151 172 - -
Bva06g02346 650 MobiDBLite consensus disorder prediction 141 203 - -
Bva06g02346 650 SUPERFAMILY CheY-like 17 138 IPR011006 -
Bva06g02346 650 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Bva06g02346 650 PIRSF RR_ARR_type-B 1 648 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bva06g02346 650 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Bva06g02346 650 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Bva06g02346 650 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Bva06g02346 650 Gene3D - 17 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02346 Bva-Chr6 15168374 15173509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02346 1 650 Response Regulator Gene Family AT2G25180 45.234 5.54e-146 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bva06g02346 Response_reg 1.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02346 - K14491 gmx:100809002 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00431 10 4505708 4510169 Bva06g02346 06 15168374 15173509 BWGD