Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02344 ATGAGTAGCCTGGTTGAAAGGCTTCGTGTAAGATCGGATCGCAAGCCAGTCTACAATCTAGACGACTCAGATGATGATGCTGATTTTTTGCCTAGAAAACCTGGGGCAACTGAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATGCAaaagaaaatgcatgTCAAGCTTGTGGAGAAAGTGGAAATCTTCTGAGCTGTGAAACATGTTCTTATGCTTATCATCCTAGATGTCTTCTCCCACCGCTCAAAACTCCTCTTCCAGACAGCTGGAGGTGCCCTGAATGTGTTAGCCCACTTAGTGATATTGAGAAGATATTAGATAGTGAGATGCGCCCCACTGTAGCTGGTGATGCTGATGCCACAAAACTGGGGTCAAAGCAAATCTTTGTTAAACAATATCTTGTTAAGTGGAAGGGACTATCTTATCTACACTGTACTTGGGTGCCAGAGAAAGAGTTCCTGAAAGCTTTCAAGACACATCCCCGTCTAAAGACCAAAGTAAACAACTTTAACCGTCAAATGGCATCTGTCAATACATCTGAGGAAGACTTTGTTGCCATCCGACCTGAATGGACTACGGTTGATCGTATACTTGCTTGCAGGGGTGATGGTGACGAGAAGGAATATCTAGTGAAATGGAAAGAACTTTCATATGATGAATGTTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTCAGTCAAGGTCTCGGAAGCATTCTTCTAGTAAGCAGAAAAGCTGTTTTAATGATGGTACTGACACAAAGAAGCAGCAAAAAGAATTTCAACAGTATGAACAAAGCCCATATTTTCTTTCGGGTGGTAAACTACATCCCTATCAGCTCGAGGGCTTGAACTTCTTACGTTTTTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGCATTGCTTTTTTGGCATCCCTTTATGGAGAGGGGGTTTCTCCACATCTGGTGGTTGCCCCACTTTCAACTCTCCGAAACTGGGAACGTGAATTTGCAACATGGGCTCCTCAAATGAATGTGGTTATGTATGTTGGATCTGCCCAAGCTCGTGCCATTATAAGAGagtatgaattttattttccgAAGAACCAGAAaaagatcaagaaaaagaaatctggTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATTAAATTTGATGTTCTTTTGACATCTTATGAGATGATCAACTTGGACACTGCATCTTTGAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAATAAggactcaaaattattttcttcattgaagCAGTATTCCAGTGGACATCGTGTGCTTTTGACTGGGACTCCTCTTcagAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTAGATGCTGGCAAGTTTGCAAGTTTGGAGGAGTTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAACAGATTTCGAGGCTACACAAAATGTTGGCACCACACCTCCTTAGAAGAGTAAAGAAAGATGTCATGAAGGAACTTCCTCCTAAAAGGGAGCTTATTTTACGTGTTGAATTAAGCAGTAAAcagaaagaatattataaGGCAATTCTGACCCGTAACTATCAGATATTAACTCGCCGAGGTGGTCCGCAGATATCTCTTATTAATGTTGTTATGGAGTTGAGGAAACTGTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGAAGATgcaaaagaatcaaataaACAGCTATTGGAATCATCGGGGAAGTTGCAATTGTTGGACAAAATGATGGTGAAGCTTAAAGAGCAAGGACACAGGGTACTCATTTATTCACAATTTCAGCACATGTTGGACTTGCTTGAAGATTACTGTACATACAAGaATTGGCATTATGAAAGGATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCTAAAAATTCTTcaagattttgttttcttctctctacTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACtgttattatatatgataGTGATTGGAATCCTCATGCTGATCTGCAAGCTATGGCCAGAGCTCACCGACTTGGACAAACAAACAAGGTGATGATATTTAGGCTTGTAACACGTGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTAGTTGTTGGGAGGTTGAAGGCTCAAAACATTAACCAGGAGGAGTTAGATGATATCATAAGGTATGGGTCAACGGAGTTATTTGCTGATGAGAATGACGAAGCAGGCAAATCCCGCCAAATTCATTATGATGATACTGCCATTGATAGATTACTGGATCGTGATCAAGTTGGAGATGAAGAAGCAACTTTAGATGATGAGGAGGAAGATGGATTTCTGAAGGCCTTTAAGGTGgcaaattttgaatatattgataaagCTGAGGCTGCAGCAGAAGAGGAGGCAGCACGAAAGAAAGCAATGGAGAATGCATCTACTGTGACCCCCACTGATAGATCAAATTACTGGGAGGAGTTATTAAAGGACAGATATGAAGTGCATAAACATGAAGAGTTCAATTCCATGGGCAAAGGGAAGCGATCCCGCAAGATGATAAATTCTGTTGAGGAGGATGATCTTGCTGGTCTAGAAGATATAAGTTCTGAAGAGGAAGATGACAATTATGAAGCAAACCTTACTGATGGTGATTCAAATTCAGCTGGAAATGCTTCGACTAGAAGGCCGTACAGAAAGAAAGCCCGtgTAGCAGATAGCACAGAGCCCCTTCCTCTGATGGAAGGCGAAGGAAAATCTTTCAGAATACTTGGTTTCAATCAAAATCAGAGGGCCGCATTTGTGCAAATATTAATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCTTGAAGCAGAAGACCCATGAAGAAATCAAAGATTATGGGACCCTGTTTTTGTCTCACATAGCAGAAGATATTACGGATGCCTCTACGTTTTCAGATGGAGTTCCTAAGGAAGGGCTTCGTATTCAAGATGTCCTAGTCAGAATTGCAGTTCTTCTCTTGGTAAAAGAGAAAGTGAAGTTTGCATCAGAAAATCCTGGCGCTCCACTTTTTTCAGATGACATTCTCTTACGCTATCCAGGTTTGAAGGGTACTAAGATATGGAAGGAGGAGCATGATTTAGTGTTACTGCGTGCCGTGTTGAAgCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAAGAACTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAATTTGCCTGTACCAGGACAAGTTGGGTCTCAGGTGCAAAATGGTGCAAATTTGACGAATGTAGAAGCGCCCAGCAACCAAACTGGTGAAAATAGTGAGAATGACGTAACAGCTGACAATACACATGGTTCTGGTGATGCTAGGAACCCAGCACAGTTATATCAGGAGTCCTCCATAATAGTTCATTTCAGAGATATGCAGAGAAGACAGGTtgagtttattaaaaaaagggtGCTGCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTCGGTGACTCGAAAGCAAatgaaacaaatgaagaacTTAAAAGTGAACCCAAGGTTACCAGTGTGCCAAGTTATAAATCAGGGGATACTGACATCGAAATGATTGATCATTTGCCTCAAGTAGAGGCAATAGCTTCAGAAGAAATTTCTGCTCGTGCTTGTGATAATGATGCAGATCGATTGGAATTGATTCGTCTGTATAATGAGATGTGCAAGATTATAGAGGAGAATGCCATGGAATCAGATCAAACAGCTTTGGCAAGAGAACCAGCAGAAGTGAAAATGCTTAACAACTTGCTCCCGCTCGAAACCATTTCTAAAGACATAAATAGAATTCTTACTCCTACTCAACAAAATTCAGAGAATAAATCGGAGGCTGTAACGCATGGTGATGTTGGGGGATCAACATTTTCGTCTATTCCTCAAGATGACTCCAAACCTGATAACACGGTAGACGATAAGAGCAAGGATGTGGTAATAGAGTCCGAAGTTAAAAGAGAAAGCAGCAGCCATGACCACCAAGAACAGATAAATGAAATACCAACTATTCCAGAGACGAAGGGAAGTGATGTAGAAATGGTCGAAGCAAAGAACGATGCCGAGTTAAATCAAAACACGGAGACATCCGAGCCTGGCGTCATTGTATTAGATGATTA 4325 0.3938 MSSLVERLRVRSDRKPVYNLDDSDDDADFLPRKPGATEEKFERIVRSDAKENACQACGESGNLLSCETCSYAYHPRCLLPPLKTPLPDSWRCPECVSPLSDIEKILDSEMRPTVAGDADATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFNRQMASVNTSEEDFVAIRPEWTTVDRILACRGDGDEKEYLVKWKELSYDECYWEFESDISAFQPEIERFNRFQSRSRKHSSSKQKSCFNDGTDTKKQQKEFQQYEQSPYFLSGGKLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYGEGVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAIIREYEFYFPKNQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSGHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKRELILRVELSSKQKEYYKAILTRNYQILTRRGGPQISLINVVMELRKLCCHPYMLEGVEPDIEDAKESNKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWHYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSTELFADENDEAGKSRQIHYDDTAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYIDKAEAAAEEEAARKKAMENASTVTPTDRSNYWEELLKDRYEVHKHEEFNSMGKGKRSRKMINSVEEDDLAGLEDISSEEEDDNYEANLTDGDSNSAGNASTRRPYRKKARVADSTEPLPLMEGEGKSFRILGFNQNQRAAFVQILMRFGVGDFDWKEFTSRLKQKTHEEIKDYGTLFLSHIAEDITDASTFSDGVPKEGLRIQDVLVRIAVLLLVKEKVKFASENPGAPLFSDDILLRYPGLKGTKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKELKIQEVICQELNLPFINLPVPGQVGSQVQNGANLTNVEAPSNQTGENSENDVTADNTHGSGDARNPAQLYQESSIIVHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDSKANETNEELKSEPKVTSVPSYKSGDTDIEMIDHLPQVEAIASEEISARACDNDADRLELIRLYNEMCKIIEENAMESDQTALAREPAEVKMLNNLLPLETISKDINRILTPTQQNSENKSEAVTHGDVGGSTFSSIPQDDSKPDNTVDDKSKDVVIESEVKRESSSHDHQEQINEIPTIPETKGSDVEMVEAKNDAELNQNTETSEPGVIVLDD 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02344 1441 Gene3D - 1041 1217 - -
Bva06g02344 1441 Gene3D - 178 241 - -
Bva06g02344 1441 SMART chromo_7 99 162 IPR000953 -
Bva06g02344 1441 SMART chromo_7 190 244 IPR000953 -
Bva06g02344 1441 Coils Coil 838 858 - -
Bva06g02344 1441 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Bva06g02344 1441 SUPERFAMILY Chromo domain-like 179 245 IPR016197 -
Bva06g02344 1441 Gene3D - 529 753 IPR027417 -
Bva06g02344 1441 CDD CD1_tandem 102 170 - -
Bva06g02344 1441 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Bva06g02344 1441 CDD SF2_C_SNF 607 733 - -
Bva06g02344 1441 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1059 - -
Bva06g02344 1441 SMART DUF1087_2 844 909 IPR009463 -
Bva06g02344 1441 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Bva06g02344 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 519 IPR027417 -
Bva06g02344 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Bva06g02344 1441 Pfam CHD subfamily II, DUF1087 845 906 IPR009463 -
Bva06g02344 1441 Gene3D - 278 528 IPR038718 -
Bva06g02344 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 1150 1181 - -
Bva06g02344 1441 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Bva06g02344 1441 Pfam CHD subfamily II, SANT-like domain 937 1071 IPR009462 GO:0003677|GO:0006338
Bva06g02344 1441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Bva06g02344 1441 SMART DUF1086_2 911 1074 IPR009462 GO:0003677|GO:0006338
Bva06g02344 1441 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Bva06g02344 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 776 IPR027417 -
Bva06g02344 1441 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Bva06g02344 1441 CDD CD2_tandem 190 241 - -
Bva06g02344 1441 SMART helicmild6 638 722 IPR001650 -
Bva06g02344 1441 SMART ultradead3 282 495 IPR014001 -
Bva06g02344 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Bva06g02344 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 906 956 - -
Bva06g02344 1441 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Bva06g02344 1441 MobiDBLite consensus disorder prediction 1422 1441 - -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 1339 1413 - -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 1369 1397 - -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 1339 1368 - -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 906 925 - -
Bva06g02344 1441 Pfam PHD-finger 54 96 IPR019787 -
Bva06g02344 1441 Gene3D - 100 175 - -
Bva06g02344 1441 MobiDBLite consensus disorder prediction 243 263 - -
Bva06g02344 1441 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1059 - -
Bva06g02344 1441 SMART PHD_3 53 96 IPR001965 -
Bva06g02344 1441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02344 Bva-Chr6 15150179 15163087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02344 308 749 RAD5 or RAD16-like Gene Family AT1G02670 22.222 6.16e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva06g02344 SNF2_N 1e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02344 K11643 - gmx:100804203 2333.52