Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02311 ATGGCGTCCAAGCTCTGCGACTCCTGTAAGTCTGCCACTGCTACTCTCTTTTGCCTTGCCGACTCAGCCTTCCTTTGCGTTGGCTGTGACTCCAAAATCCATGCCGCCAACAAGCTAGCCTCCCGTCACGCGCGTGTTTGGGTATGCGAAGTTTGCGAGCAGGCACCTGCCCATGTCACCTGCAAGGCTGATGCTGCTTCACTCTGCGTAACTTGCGACCGTGACATACACTCTGCTAATCCACTCGCCCGCCGTCACGAGCGCGTCCCTGTCACCCCCTTCTACGATCATGTACCTTCCTCCCTCAACTCATCTATCCCTCCCAAATCAGCTCCAATTAATTTCCTCGATGACCGCTACTTCTCCGACGCAGAAGCAGATGATGTCAGCCGGGAAGAAGCCGAAGCTGCTTCGTGGTTGCTCCCTAACCCAAAGGCCGTGGATAGCCCGGATCTCAACTCGGGTCAGTACGTGTTGCCTGAAATGGACCCCTATCTGGATCTAGACTACGGGCCCGCGGATCCGAAAGCAGAAGCACAGGAGCAGAATAGTTCCGGCACCGACGGAGTAGTACCGGTACAGAGTAAGACTACGGTGGCTCCTTCGGCGAACGAGCACTACTTTGACATGGATTTCTCTGCCTCGTCTAAGCCTTTCGCCTACGGTTATAACGCACACGCAAAGTGCCTGAGCCACAGTGTATCGTCGTCGTCTCTTGAGGTTGGGGTTGTACCGGATGGGAATAGGATATCGGATATATCAAACAGTTACAGCAAGCCAATGACAAGGAACGGTTTGATAGAGTCTGGAAATCAGACGATGCAGATCTCAGCAGCGGACAGGGAAGCTAGGGTTTTGAGGTACagggagaagaggaagaatcGAAAGTTCGAGAAGACAATCCGTTACGCATCCCGAAAAGCGTACGCAGAAACCAGGCCAAGGATCAAAGGGAGGTTCGCGAAACGCTCCGATCTTCAAGTCGAAGTAGATCATTTTGCAGGATACGGCGTCGTACCGTCGTGTTA 1028 0.5253 MASKLCDSCKSATATLFCLADSAFLCVGCDSKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAASLCVTCDRDIHSANPLARRHERVPVTPFYDHVPSSLNSSIPPKSAPINFLDDRYFSDAEADDVSREEAEAASWLLPNPKAVDSPDLNSGQYVLPEMDPYLDLDYGPADPKAEAQEQNSSGTDGVVPVQSKTTVAPSANEHYFDMDFSASSKPFAYGYNAHAKCLSHSVSSSSLEVGVVPDGNRISDISNSYSKPMTRNGLIESGNQTMQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDLQVEVDHFAGYGVVPSC 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02311 342 ProSiteProfiles CCT domain profile. 281 323 IPR010402 GO:0005515
Bva06g02311 342 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bva06g02311 342 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bva06g02311 342 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bva06g02311 342 CDD Bbox1_BBX-like 5 48 - -
Bva06g02311 342 MobiDBLite consensus disorder prediction 178 192 - -
Bva06g02311 342 Pfam CCT motif 281 323 IPR010402 GO:0005515
Bva06g02311 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 341 IPR045281 GO:0009909
Bva06g02311 342 MobiDBLite consensus disorder prediction 168 192 - -
Bva06g02311 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 341 - -
Bva06g02311 342 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bva06g02311 342 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bva06g02311 342 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bva06g02311 342 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02311 Bva-Chr6 14975644 14977268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02311 1 341 C2C2-CO-like Transcription Factor Family AT5G24930 62.973 2.84e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva06g02311 zf-B_box 4.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02311 - - qsu:111986927 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02311 06 14975644 14977268 Bva06g02311 06 14975644 14977268 ECH