Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02308 ATGGAAAAATTGCAGGAAAGCATAAAGAATCTTGAAAGACAGTCTTCACCTGTGGAAGAACTGTCCCAGATTCTCAAGAGAGCAGataatttcttacattttataCTCCAGAACGCACCTGTTGTCATTGGCCATCAGGACAACGAGTTGCGCTACCGCTTTATCTATAATCATTTCCCAAGTTTGCAAGAGGAGGACATTATAGGAAGAACAGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTTCTGGAAAAAGGATTGCCAGCAAAAAGGGAAATCACCTTTGAGACAGAATTATTTGGATCAAAAACTTTCTTGATTTATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGTATAAATTATATGGGAATGGATGTAACAGATCAGgtaagaaaaagagaaaggatgGCAAAGATTCGGGAAGAGATTGCAGTTCAGAAAGCCAAAGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTAGCAACGATGTCTCACGAAATAAGATCTCCATTGTCTGGGGTTGTTAGCATCGCTGAGATTCTTTCTAACACAAAACTTGATCGGGAGCAAAGACAGCTCTTGAATGTCATGCTATCTTCGGGAGATTTGGTTCTTCAACTTATAAACGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTAGAAGCCACCAAATTCCGACCAAGAGAGGTAGTAAAGCATGTGCTACAGACAGCCGCAGCGTCAATGCAGAAAATGTTAACCTTAGAAGGACACGTAGCAGATGATGTACCTATTGAGGTGATTGGAGATGTATTAAGAATTCGTCAAATACTCACCAATTTAATCAGCAATGCAATCAAATTTACACATGAAGGGAAAATTAGTATAGACCTGTACGTTGTTCCAGAACCACCATTTGCAAAAGCAGAAGAAAGCCAAAGTCAGCAGAAGATTTCTGCAGACAAGTCAAGCATTTCGTCGAATGGactaaaagaaagagaagagaaatatcaTTCAACATCTCAAAATAGCAGCAATCCAAATTGTGTTAATGGTCAGAAACATGCTGATCATTCCAACAGAAATCATGTATTCGGCGATGAATGTAGATCCCCGGTGAAGAGTGAATGCTCAGTGAATGGAGATGAAACAACAGTGTGGATACGCTGTGATGTGCGTGACACAGGAATTGGAATACCAGAAAATGCTATACCTACTCTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAATATGGTGGCACAGGGTTAGGGCTAGCAATCTGCAAACAGCTGGTTGAGTTAATGGGTGGTCGTCTGACGGTCTCTAGCAAAGTACACTACGGTTCTACATTCACATTCATTCTACCAAACAAGGTTTCAACTGTTTGTGATCATTCTGATGATTCCGATGAGCTCACAGACATGGAAAACGAGGATGACGACGACGACGATGCCAGTGAGGGTTTCTTTCAATTCCAACCACGCACTTTGGGCTCTCTGTTCTCTTCCAATGGATCTAGCCGAACCCAGAGATTATTACCTCAGAAAATTGGGTCGCATAAATTTAATGGCTTTCCAGAGAATAGTTACTCATTCCCCTCTTCTAATAACACGAGACCGAAAGAGACGCCTTCTGTTCAAGATACAACCTCCGACGTCGTTGATGCTCTAGAGATGTCCGAATCAGCAAGTTCATCAAGTCATCACAGTCCGCAGGCAGAAGACGAAAATGTAATTAGAAAAGACAAACAGGGTCAAGACAAGACATATGCTCAGTCGCATCATGGCAGTGCCCGTGCAGATTCTTGTAATCTCAAGGGAGGAACTAGAGAAATGGGtgtaaaaacaaaaccaatcGAAACCCAGCAAACATGTCAGAGTCAAAACAAGACAGTTATAACTTCGCAACGTGTTACCTGCAGCAGTACATCAGTAGTTACCCAACCTACATCGAATCCTAGGATTCTTCTTGTTGAAGACAATAAGATCAATATAATGGTGGCACAGTCTATGATGAAGCAGTTAGGCCAAAGCATAGACGTTGTCAATAACGGAGTTGAAGCCGTTCGTGCAGTTCAACGCCGTAGTTATGATCTTATTCTCATGGATGTTTGCATGCCAGTTATGACTGGCCTTGAGGCTACAAAGCTTATTAGATCTTTTGAGGAGACTGGCAACTGGGATGCTGCGTCAAGAGCTGGAATTGAGCCTGCCGGGCCTATTTCAGATTTGCCACACAAAAAGCGTATCCCCATCGTCGCGATGACAGCAAATGCTTTGACAGAGAGTGCGGAAGAGTGTTATGCAAACGGCATGGACTCGTTTATGTCAAAGCCAGTGACCTTTCAAAAGTTGAAAGAATGCCTAGAACAATATCTAACATG 2453 0.4085 MEKLQESIKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDNELRYRFIYNHFPSLQEEDIIGRTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILSNTKLDREQRQLLNVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASMQKMLTLEGHVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKISIDLYVVPEPPFAKAEESQSQQKISADKSSISSNGLKEREEKYHSTSQNSSNPNCVNGQKHADHSNRNHVFGDECRSPVKSECSVNGDETTVWIRCDVRDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKVHYGSTFTFILPNKVSTVCDHSDDSDELTDMENEDDDDDDASEGFFQFQPRTLGSLFSSNGSSRTQRLLPQKIGSHKFNGFPENSYSFPSSNNTRPKETPSVQDTTSDVVDALEMSESASSSSHHSPQAEDENVIRKDKQGQDKTYAQSHHGSARADSCNLKGGTREMGVKTKPIETQQTCQSQNKTVITSQRVTCSSTSVVTQPTSNPRILLVEDNKINIMVAQSMMKQLGQSIDVVNNGVEAVRAVQRRSYDLILMDVCMPVMTGLEATKLIRSFEETGNWDAASRAGIEPAGPISDLPHKKRIPIVAMTANALTESAEECYANGMDSFMSKPVTFQKLKECLEQYLT 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02308 817 SMART HKATPase_4 288 482 IPR003594 -
Bva06g02308 817 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 288 480 IPR003594 -
Bva06g02308 817 MobiDBLite consensus disorder prediction 329 345 - -
Bva06g02308 817 Gene3D - 164 242 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 359 374 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 541 633 - -
Bva06g02308 817 CDD HATPase_EvgS-ArcB-TorS-like 293 479 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 329 376 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 541 595 - -
Bva06g02308 817 CDD REC_hyHK_CKI1_RcsC-like 678 812 - -
Bva06g02308 817 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 2 816 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 488 512 - -
Bva06g02308 817 Gene3D PAS domain 19 154 - -
Bva06g02308 817 PRINTS Bacterial sensor protein C-terminal signature 442 460 IPR004358 GO:0016310|GO:0016772
Bva06g02308 817 PRINTS Bacterial sensor protein C-terminal signature 466 479 IPR004358 GO:0016310|GO:0016772
Bva06g02308 817 PRINTS Bacterial sensor protein C-terminal signature 407 421 IPR004358 GO:0016310|GO:0016772
Bva06g02308 817 Pfam Response regulator receiver domain 678 745 IPR001789 GO:0000160
Bva06g02308 817 CDD HisKA 176 238 IPR003661 GO:0000155|GO:0007165
Bva06g02308 817 Coils Coil 1 21 - -
Bva06g02308 817 SMART REC_2 676 812 IPR001789 GO:0000160
Bva06g02308 817 Gene3D - 670 817 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 596 612 - -
Bva06g02308 817 MobiDBLite consensus disorder prediction 492 510 - -
Bva06g02308 817 Gene3D - 243 485 IPR036890 -
Bva06g02308 817 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 175 242 IPR036097 GO:0000155|GO:0007165
Bva06g02308 817 ProSiteProfiles Histidine kinase domain profile. 184 482 IPR005467 -
Bva06g02308 817 Pfam His Kinase A (phospho-acceptor) domain 179 242 IPR003661 GO:0000155|GO:0007165
Bva06g02308 817 SMART HisKA_10 177 242 IPR003661 GO:0000155|GO:0007165
Bva06g02308 817 SUPERFAMILY CheY-like 674 816 IPR011006 -
Bva06g02308 817 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 231 480 IPR036890 -
Bva06g02308 817 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 2 816 - -
Bva06g02308 817 ProSiteProfiles Response regulatory domain profile. 677 816 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02308 Bva-Chr6 14959370 14964179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02308 1 816 Histidine Kinase Gene Family AT5G10720 58.617 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva06g02308 HATPase_c 2.3e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02308 - - gmx:100819520 1161.36