Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02298 ATGGTGAAACCTGCCATGGCCACTAATAACCCCATCCCTTCTCACGAGATCAAGTACAAAGGCGTGAGAAAACGCAAATGGGGCAAATGGGTATCCGAAATCAGACTTCCAAACTGCCGGGACCGGATTTGGTTAGGCTCTTACGACTCGCCGGAGAAGGCCGCAAGGGCTTTCGACGCAGCCCTTTTCTTGCTACGGGGTCGCCGTGCCAATTTCAATTTCCCCGACACCCCTTTCGAGATCAACATTGGTACTGGAGCTGACCAAACTCTCACTCCACAGGAGATTCAAGTTGTTGCTACTAGGTTTGCTAATGAGCAGgaggataataataataataatattgaaggcgaaggagaagaagaacgAGGGAGTCCGATGAATATTGATAAAGAAGAATCCTCGGACTCTGTTACGGGTGCTAATTCATTTGAAGAAGTTAATAATGCGGTAACACAGACAGGTTATACTTGTGCCCATTCCTCGCCATCATCCATGTATAATGGAAGCTGTCTGCAAGTGGAAGATATGGACTTGTCCTTTTTCCACACGTTGGATAATTATTCTGATGGGTTTACCAGTACTAATGATTTAGGCCTCTATTCTGGGATGCACTCCGGGGAGATATTTTATCCAACATCACCACAACCTCTTCAAGACAATGAGACCATCGGAAATTTTGGAGATTTTGATGATCATGCTTTTTCTCACCAATCATTCCTCTGGAACTTCTG 734 0.4292 MVKPAMATNNPIPSHEIKYKGVRKRKWGKWVSEIRLPNCRDRIWLGSYDSPEKAARAFDAALFLLRGRRANFNFPDTPFEINIGTGADQTLTPQEIQVVATRFANEQEDNNNNNIEGEGEEERGSPMNIDKEESSDSVTGANSFEEVNNAVTQTGYTCAHSSPSSMYNGSCLQVEDMDLSFFHTLDNYSDGFTSTNDLGLYSGMHSGEIFYPTSPQPLQDNETIGNFGDFDDHAFSHQSFLWNF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02298 244 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Bva06g02298 244 MobiDBLite consensus disorder prediction 116 130 - -
Bva06g02298 244 MobiDBLite consensus disorder prediction 107 140 - -
Bva06g02298 244 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Bva06g02298 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 13 244 - -
Bva06g02298 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 244 - -
Bva06g02298 244 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02298 Bva-Chr6 14914565 14915299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02298 14 132 AP2-EREBP Transcription Factor Family AT1G19210 59.167 5.32e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g02298 AP2 8.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02298 - - qsu:111984657 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02298 06 14914565 14915299 Bva06g02298 06 14914565 14915299 ECH
Bva10g00484 10 4787494 4788523 Bva06g02298 06 14914565 14915299 ECH