Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02296 ATGGCGGACGTGATGGTGATGAAAGAGATTGAGGAGACAGCGTCGCGGCTTGGACTCGATATTTCTAGCGTCGATCTGGATTCAATTCACTTGCCTCCAGGCAATGATTTTGGTATTGTCAGTGATGATGAGGATATCTACCAAGAGGATAATCTTGAGTTTGACTCCGGGTTCGGCAACATTATTGTTGTGGATAACCTCCCGATTGTTCCTagtgagaaatttgaaaagcTCGAAGGTGTAATCCGTAAAATTTATAGCCAGACTGGTGTTATTAATGAGGGCGGCCTTTGGATGCCTGTTGATCCCCAGACTGAGAAGACCTTAGGTTATTGCTTCATTGAGTATGGTACTCCTCAGGAAGCTGAGCTAGCTAAAGAGAAGACACATGGATACAAGCTAGATCGTGCACATGTTTTTTCGGTAAACATGTTTGATGACTTCGATAGGTTTATGAAAGTTCCAGATACGTGGGCTCCTCCTGAAACGAAGCCTTATGCCCCAGGGGAAAATCTTCAACACTGGCTTACTGATGCAAAAGCCCGAGATCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGACATTTAAAGCCTGATCCCGTTTATAAACGCACTTTTTGGACTGAGAGTTTTGTGCAATGGTCCCCTCTGGGTACATACTTGGCTACGGTTCACAGGCAGGGAGCAGCTGTTTGGGGTGGTGCTACAACATTCAATCGTCTGATGCGTTATGCTCATCCTCAGGTAAAGCTCATTGATTTCTCACCCGGTGAGAAGTATTTCGTAACTTACAGCAGTCATGAACCAAGCAATCCTCGAGATGCTAATAGGGttgtaataaatatatttgatgtgaGAACTGGTAAAGTGATGAGGGATTTTAAGGGAAGTGCTGATGATTTTGCGACTGGAGGTACTGGAGGTGTCACAGGGGTTTCATGGCCTGTTTTCAGATGGGGTGGTGGGAAAGATGATAAGTACTTTGCAAGAATGGGGAAAAATGTAATCTCTGTCTATGAGACAGATACCTTTTCTCTTATCGACAAAAAGTCCTTGAAGGTTGAAAATGTAATGGATTTGTGCTGGTCTCCAACTGATCCAATTCTTGCACTCTTTGTTCCTGAGATGGGTGGTGGTAACCAGCCTGCCAGGgTAAGTCTGGTACAAATCCCCAGTAAGGAGGAACTCAGGCAGAAAAACCTTTTTAGTGTTAGCGATTGCAAGATGTACTGGCAAAGCAATGGGGAGTACCTTGCTGTCAAGGTAGACAGATATactaaaacgaagaaaagcacatacACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCCATTGAAGTTCTGGAACTTGAGAATAAGAATGACAAGATTATTGCCTTTGCTTGGGAGCCAAAGGGCCACAGGTTTGCAGTTATTCATGGTGATAACCCAAAGCCTGATATTAGCTTCTACGCTATGCGAACTGCGCAGAACACAGGCCGGGTCTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTCTCTTTTGGTCACCTGCAGGTCGCTATATTGTGCTTGCAGGATTGAAAGGCTTCAATGGTCAGTTGGAGTTTTACAATGTGGATGAGCTTGAAACCATGGCAACTGCTGAACATTTCGTGGCAACAGATATTGAATGGGATCCAACCGGAAGATATGTTGCCACTGCTGTGACTTCGGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCTTCTCTATCGGATATTGAAGGATCATTTCTTCCAGTTCTTATGGCGACCAAGGCCACCATCTGTCTTGAGTccagagaaagaggaagagattGCAAGAAACTTGAAGAAATATAGTAAGAAATACGAGGCAGAAGATCAAGATGTGTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGCAGGTTGTTGAAAGAAGAGTGGGACAAGTGGGTTAATGAATGGAAGCTATTGAATGAACAAGATAAGTTAGAGAGGCAAAGGCTTCGGGATGGAGAAGCCAGTGACGAAGAAGAGGAGGAATACGAGGCAAAGGACATCGAAGTTGAGGAAGTCGTCGATGTATCTGAGGAGGTCCTTCCTTTTGAATATGGCCAAGACTG 2162 0.4292 MADVMVMKEIEETASRLGLDISSVDLDSIHLPPGNDFGIVSDDEDIYQEDNLEFDSGFGNIIVVDNLPIVPSEKFEKLEGVIRKIYSQTGVINEGGLWMPVDPQTEKTLGYCFIEYGTPQEAELAKEKTHGYKLDRAHVFSVNMFDDFDRFMKVPDTWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYFVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFATGGTGGVTGVSWPVFRWGGGKDDKYFARMGKNVISVYETDTFSLIDKKSLKVENVMDLCWSPTDPILALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYAMRTAQNTGRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFVATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSVLSPEKEEEIARNLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWDKWVNEWKLLNEQDKLERQRLRDGEASDEEEEEYEAKDIEVEEVVDVSEEVLPFEYGQD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02296 720 CDD RRM_eIF3B 59 143 IPR034363 -
Bva06g02296 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bva06g02296 720 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Bva06g02296 720 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva06g02296 720 Gene3D - 180 439 IPR015943 GO:0005515
Bva06g02296 720 Gene3D - 55 154 IPR012677 -
Bva06g02296 720 PANTHER BNACNNG51870D PROTEIN 5 713 - -
Bva06g02296 720 Gene3D - 456 621 IPR011042 -
Bva06g02296 720 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva06g02296 720 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva06g02296 720 SUPERFAMILY RNA-binding domain, RBD 56 143 IPR035979 GO:0003676
Bva06g02296 720 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Bva06g02296 720 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02296 Bva-Chr6 14901564 14905899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02296 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.574 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02296 K03253 - zju:107419937 1295.41