Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02276 atggtaAGGCCTTCAGCGACCAGACAGAGTCACAATACAGAAGCCTGTAGAGGAGCGTGGACAGGTGAGGAGGACCAGAAACTGGTCCAAGCCATTGAACTTTATGGCCCAAGGAGGTGGAATGTCGTTGCAGCCAATGCTGGTCTAAATCGATGTGGAAGAAGTTGCAGATTGAGATGGTTGAATTACCTTAGACCCAATATCAAGATAGGCAATATAACAGACCAAGAGGAGGATTTAATATTAAGGCTTCATAAACTTTTGGGGAACAGGTGGTCGTTGATTGCTGGAAGACTCCCAGGTCGAACTGACAATGAGATCAAGAATTATTGGAACTCTCATTTGAGCAAGAAGATAAAGcttcaaaaccaaaacagGGTTTTGAAAATGGAGTCCATGCATACGCAGCCACCAGAGATAGATGCAGTTAAGGTCCTTGAGGATAATGAAAAAGCTACCACTAAGGTTGAGGAAGAATCTAAGACGACTAGGTTTATTGAAGGTGATGACCTGTTTCATTGTGCTGACGAGGACCCGCTGAGTTTGGAATGGATGAGTAAATTTCTTGACCTAGACGAAAGTTGGTTCGAATTTGCATA 599 0.4207 MVRPSATRQSHNTEACRGAWTGEEDQKLVQAIELYGPRRWNVVAANAGLNRCGRSCRLRWLNYLRPNIKIGNITDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKLQNQNRVLKMESMHTQPPEIDAVKVLEDNEKATTKVEEESKTTRFIEGDDLFHCADEDPLSLEWMSKFLDLDESWFEFA 199
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02276 199 Gene3D - 74 162 - -
Bva06g02276 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 198 - -
Bva06g02276 199 CDD SANT 19 64 IPR001005 -
Bva06g02276 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 64 IPR017930 -
Bva06g02276 199 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Bva06g02276 199 Gene3D - 17 69 - -
Bva06g02276 199 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 11 198 - -
Bva06g02276 199 SMART sant 69 117 IPR001005 -
Bva06g02276 199 SMART sant 16 66 IPR001005 -
Bva06g02276 199 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Bva06g02276 199 CDD SANT 74 115 IPR001005 -
Bva06g02276 199 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Bva06g02276 199 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Bva06g02276 199 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Bva06g02276 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva06g02276 Bva-Chr6 14789692 14790505 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02276 7 143 MYB Transcription Factor Family AT5G40330 54.745 2.17e-52 166
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g02276 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02276 K09422 - qsu:111997867 257.299
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02276 06 14789692 14790505 Bva06g02276 06 14789692 14790505 ECH
Bva10g00511 10 4917721 4918773 Bva06g02276 06 14789692 14790505 ECH
Bva05g01101 05 5676798 5678307 Bva06g02276 06 14789692 14790505 ECH