Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02275 ATGGCTCCTTTATCCTCGATCAACCAGTTCCTcaaccttttcattttttcactCTTGCTCCTCCTCAGTTTCCGTAGGGGCATTCTAGCAAAACCTAATCCCTCTGCTCTCACAAAATCGAAATACTTAAAGGTGCCATTGCAAGAGTTTGAGAATTCAATGAATTCAGCAATGAAACGTGTTCGAAGTGTTGTCTCTGTGATGTCCAACACAAAGTACGTTTCTAATGCTAATGTTAATGCTACTGCTGATTGCCTTGAATTGCTAGACTCAGCCTGGGAACTTTTGGATTGCGCTATCACCGCTTTGCAGAATCATGGAGAGACAGAGGTGGATTGTGAATGCAAAACAGGAGATGTAATCTCAGACGTGAAGAGTTGGCTAAGTGGTGCCCTCACCAACCTAGCAACCTGCATTGACGAATTATCGGATACCAATCACATTTCAAAGGACTCAGTTTCACCCTCCATGCACCAACTCGAAATCATCCTACATAACCTCTCAGCCATGGTCAAACCCCAAAGCACCAACTCAGGAACCCCTTCTTGGGTTGAGCCCCACGTATTAAGACTCATCCAAGCCGATGATATCAAACCCAACATCACAGTAGCTGCTGATGGGTCTGGAAACTTCACCAGCATCACCCAAGCCACCCAAACAGCACCAAACAAGAGCCAATACCCCTATCTCATTTACGTGAAGAAGGGCATATATAATGAATACatagaaatcaaaaagaaCCTCTGGAACATTTACATGATCGGAGACGGCATCAACCAAACTATCATCACAGGAAACCACTCCAACGCAACTGGCTGGACCACCTTCCGTTCTGCAACATttgctGTTAGAGGGCAAAACTTTGTAGCAATTAACATTACGTTCGAGAATACGGCGGGTGAAGAAGGGAACCAAGCAGTGGCCTTACGTTCAGATTCTTGCAAATCCATATTTTATCAGTGTGAGATGAGAGGTTACCAGGATACACTTTACCCCCACAGGGCCGTtcagttttataaaaactGCAAAATCAGGGGCACCGTAGACTTCATTTTTGGCGACGGCACTGTCGTTTTCCAAGGATGTGAAATATTATCCAGGCAGCGTCGTTTAAGTGTGGGTGGGTACAACACCATCACAGCTCAGGGTCGGAAATTTCCGGAAAACACCACTGGGTTCTCTTTCCATATGTGTAATATCACCGGCGACTCGGATCTGATGTCCTCTCTGAACCGAACCCGAACCTATCTGGGCCGTCCATGGAAATCTCATGCACGAGTGGTGATCATGGAGTCCAATGTCAGCGACATCGTTCACCCAGCTGGATGGGCCGAAATGGATCCAACCTATGACTCAACCGTGTTCTATGGAGAGTACAAAAATAATGGGCTCGGTTCGGGTGTGACTGGGCGGGTCAAGTGGCCTGGTGTTCATGTTAATATTGGCAAGAACACTGCCAACAACTTCACAGTCTCGGTCTTTATTAAAGGACATTCCTTTATTCCTTCTTCTAACATCCCATACGTACCAGGATTAGAATCCTA 1544 0.4475 MAPLSSINQFLNLFIFSLLLLLSFRRGILAKPNPSALTKSKYLKVPLQEFENSMNSAMKRVRSVVSVMSNTKYVSNANVNATADCLELLDSAWELLDCAITALQNHGETEVDCECKTGDVISDVKSWLSGALTNLATCIDELSDTNHISKDSVSPSMHQLEIILHNLSAMVKPQSTNSGTPSWVEPHVLRLIQADDIKPNITVAADGSGNFTSITQATQTAPNKSQYPYLIYVKKGIYNEYIEIKKNLWNIYMIGDGINQTIITGNHSNATGWTTFRSATFAVRGQNFVAINITFENTAGEEGNQAVALRSDSCKSIFYQCEMRGYQDTLYPHRAVQFYKNCKIRGTVDFIFGDGTVVFQGCEILSRQRRLSVGGYNTITAQGRKFPENTTGFSFHMCNITGDSDLMSSLNRTRTYLGRPWKSHARVVIMESNVSDIVHPAGWAEMDPTYDSTVFYGEYKNNGLGSGVTGRVKWPGVHVNIGKNTANNFTVSVFIKGHSFIPSSNIPYVPGLES 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02275 514 Pfam Pectinesterase 200 497 IPR000070 GO:0030599|GO:0042545
Bva06g02275 514 Pfam Plant invertase/pectin methylesterase inhibitor 51 158 IPR006501 GO:0004857
Bva06g02275 514 Gene3D - 197 514 IPR012334 -
Bva06g02275 514 CDD PMEI-like_4 28 175 - -
Bva06g02275 514 PANTHER PECTINESTERASE 43 509 - -
Bva06g02275 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 172 IPR035513 -
Bva06g02275 514 SUPERFAMILY Pectin lyase-like 198 511 IPR011050 -
Bva06g02275 514 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Bva06g02275 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 173 IPR035513 -
Bva06g02275 514 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 43 509 - -
Bva06g02275 514 SMART PMEI_2 24 170 IPR006501 GO:0004857
Bva06g02275 514 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02275 Bva-Chr6 14786660 14788797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02275 4 514 Carbohydrate Esterase AT3G43270 43.820 2.27e-146 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02275 K01051 - qsu:112004696 449.129