Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02272 ATGGGTTGGGATCACTTGGGAAGAAATGGCCATTCGGACTCGGGTCCTACCACGAGCACCGCCACCGAAGAATCGGCACCGCGGCGGTTTCCGCTTGCTGCTCAGCCAGAGATCATGAGAGCAGCTGAGAAAGATGACCAGTATGCCTCTTACGTCTATGAAGCATGTCGCGACGCTTTCCGCCACCTCTTTGGTACAAGAGTTGCAGTTGCATACCAAAGTGAGACAAAACTTCTGGGACAGATGCTTTACTACGTGCTGACAACAGGTTCAGGACAACAGACGCTAGGAGAGGAATACTGTGACATCACTCAGGTCGCAGGTCCATTTGGACTTCCTCCTACCCCTGCAAGGCGGGCTCTTTTTATTGTATACCAGACAGCCGTTCCATATATTGCAGAACGTATAAGTTCTAGAATTGCTTCCCGAGGCATTGCCCTGGCTGATTCACAATCTGATGAGATCTATGGCGAAAATGCCATGAGAAGCAGTCATTTGCAAACTTCTGCAGTGAGTGAACTTCCGTCTTCCACATCACGGCCATCTGTTACAACACTTCGAAGGTTGAAGGAGAAACTGAGTAGATTATGGTTGCATGTAGTTCAGAGATGGCCTGCGATGCTCCCTATGGTTCGTGATTTGTTGCAATTGGTTCTTCGCACTAATCTCATGTTCTTCTACTTCGAAGGCCTCTATTATCATATATCAAAACGTGCTACTGGCATCCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATACTCGGAGTATTTCTTCTGATTCAACTTTGTATAATTGCTGCCGAAGGGCTGCGTCGAAGAAATTTATCTTCACTTGCTAGTTCAGTTCACCAGGCATCCATTGGGGCCCACCAGACACCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAAGGCACTCTGGCATCTGCAGATACTGACAAAGGAAGTTGGATCTCTGACTCTTCACCTTCTGAGTCCCAAACGAATAGTGGAATCAGCAAATGTACACTTTGCCTGAGTAATCGGCAACATCCAACAGCTACATCGTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGCCCTCTTTGCCGCACGCCCATAACACACTCAAGTTTAGTTTGTTTGTATCATTCAGACTTCTA 1187 0.4676 MGWDHLGRNGHSDSGPTTSTATEESAPRRFPLAAQPEIMRAAEKDDQYASYVYEACRDAFRHLFGTRVAVAYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPFGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSDEIYGENAMRSSHLQTSAVSELPSSTSRPSVTTLRRLKEKLSRLWLHVVQRWPAMLPMVRDLLQLVLRTNLMFFYFEGLYYHISKRATGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNLSSLASSVHQASIGAHQTPAGRGLPVLNEEGTLASADTDKGSWISDSSPSESQTNSGISKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCLYHSDF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02272 395 MobiDBLite consensus disorder prediction 1 30 - -
Bva06g02272 395 CDD RING-HC_PEX10 340 379 - -
Bva06g02272 395 ProSitePatterns Zinc finger RING-type signature. 356 365 IPR017907 -
Bva06g02272 395 SUPERFAMILY RING/U-box 340 384 - -
Bva06g02272 395 MobiDBLite consensus disorder prediction 318 336 - -
Bva06g02272 395 MobiDBLite consensus disorder prediction 11 25 - -
Bva06g02272 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 392 IPR013083 -
Bva06g02272 395 SMART ring_2 341 378 IPR001841 -
Bva06g02272 395 PANTHER PEROXISOME BIOGENESIS FACTOR 10 26 392 - -
Bva06g02272 395 MobiDBLite consensus disorder prediction 317 336 - -
Bva06g02272 395 Pfam Pex2 / Pex12 amino terminal region 45 278 IPR006845 -
Bva06g02272 395 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 26 392 - -
Bva06g02272 395 ProSiteProfiles Zinc finger RING-type profile. 341 379 IPR001841 -
Bva06g02272 395 Pfam Zinc finger, C3HC4 type (RING finger) 339 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02272 Bva-Chr6 14774543 14778769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02272 327 391 C3H Transcription Factor Family AT4G27470 38.158 9.62e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02272 K13346 - gmx:100783914 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02272 06 14774543 14778769 Bva06g02272 06 14774543 14778769 ECH