Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02265 ATGGCGAACAACAATGATTTTGTTCCCTACCATGATCTATACGATTCCTTTTCACTAAACATGTTCAATTTCGGGGATGGCACTAATCCGACACTTTCCGAAATATTGCAAACTGGGGGACCCTCCTCTGCCAACTCTTCCTTATGTCCCCAACAAAGTAACGGAAATGggaatggaaatgaaaatgaacatGAACATGGACACCTGTTTCAGAACACAGACCGAACGATTCATGACATGGGTAATTTTTCTATCAACTCTTCCTTACGTCCCCAACAAAGTAAAGGAAATGGAAGTGAAAATGAACGTGGACACTTGTTTCAAAACACGGACCCAACGATTCAAGCCGTGGGTAATATTTCTACCAGCCAAGGAGGGAATTTCGAAGTGGGTGCATCAGAATTTGTCGGCAAAAACAGTGATCCAGATCCAAATGAACAAGGCAACTCTATCGGACCGGTTCCACTTTCAATTTGGCCAGCACCACCAATTCCATTTTTATGCAGTTGCTGTCATGTACTCAGAGAAATCATTCATACTAATGGTGCCAACCTCAGAAGACTTGAGATTCATGGAAGGGTCGGCATAATCTGTCATGCAATTCAGAAGCAGAGTGCCAATGTGGGATCTTCAGACAACAGTCATCAATATCAAATGTTTGATTTCTGCAAGAAAAGCACAGAAGAAATCAAGATTTTCCTCATGGAGTATTGCTTACATCAGATTTCATCAGGCTACTTGTTGATTCAAGACCCTCTCTCCAACTACTACGAAGCCCTCAGCATTGGTCTAAGCTGGACTGATTTTTACGATGACCTTCTTCACAATTCAGCGTCACAATCTGAAGACATGGAACATAGAGCGGAGGCCAGGACTGAGGATGAGAGTGCGATGGAAAGGAATCCAAAAACATTCCTTGCAGCACAGagagagagagtggggAAGATGAAGCTGAGGCATCTAAGTGATTACTTTCATCTACCCATTGAAGAGGCAGCGAAGCTGCTTAATTTAAGCCCCACGGTTCTGAAGAAAATATGCCGTAATGAAGGATTATTGCGATGGCCACATCGAAAGCTGAAAGTTATTGCAAGGCGAATAATAGCATTGAGAGAAAGTTTAAAAAGACAAGATACTGCATCAAAGGAAGTAACTCTAGCAGAAATTGCTAGACTCGAACAAGAAATGATCCAGCTTTGTGGAGGGATGTCGCCATCTCCAGTTATTTTCGAAGGAAAGTG 1241 0.4126 MANNNDFVPYHDLYDSFSLNMFNFGDGTNPTLSEILQTGGPSSANSSLCPQQSNGNGNGNENEHEHGHLFQNTDRTIHDMGNFSINSSLRPQQSKGNGSENERGHLFQNTDPTIQAVGNISTSQGGNFEVGASEFVGKNSDPDPNEQGNSIGPVPLSIWPAPPIPFLCSCCHVLREIIHTNGANLRRLEIHGRVGIICHAIQKQSANVGSSDNSHQYQMFDFCKKSTEEIKIFLMEYCLHQISSGYLLIQDPLSNYYEALSIGLSWTDFYDDLLHNSASQSEDMEHRAEARTEDESAMERNPKTFLAAQRERVGKMKLRHLSDYFHLPIEEAAKLLNLSPTVLKKICRNEGLLRWPHRKLKVIARRIIALRESLKRQDTASKEVTLAEIARLEQEMIQLCGGMSPSPVIFEGK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02265 413 MobiDBLite consensus disorder prediction 280 299 - -
Bva06g02265 413 Pfam RWP-RK domain 316 361 IPR003035 -
Bva06g02265 413 MobiDBLite consensus disorder prediction 80 106 - -
Bva06g02265 413 MobiDBLite consensus disorder prediction 33 60 - -
Bva06g02265 413 ProSiteProfiles RWP-RK domain profile. 303 383 IPR003035 -
Bva06g02265 413 MobiDBLite consensus disorder prediction 33 66 - -
Bva06g02265 413 PANTHER RWP-RK DOMAIN PROTEIN 49 402 - -
Bva06g02265 413 PANTHER PROTEIN RKD4 49 402 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02265 Bva-Chr6 14749620 14751868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02265 313 398 AtRKD Transcription Factor Family AT5G66990 38.202 7.46e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bva06g02265 RWP-RK 8.8e-20 No_clan