Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02264 ATGGAGGGAGGTGCTCCATACAATCCTCGTACTGTCGAGGAAGTCTTCAGGGATTTCAAGGGGCGAAGAGCTGGCATGATTAAGGCTCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGCGATCCGGGGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCTGAGCCTGCATTGGGTATTAACTTTGCTAGAGATGGCATGCAAGAAAAGGACTGGCTATCGTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCTGTGGCTTTCTATTTCGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGACtgtttaatatgataaatgatCTTCCGACAATATTTGAAGTTGTTACAGGGTTGGCCAAGAAACAAGGACAAGtacaaggaaaggaaaagtCATCAGTTTCTAATCATAGCAGTAACAAATCTAAATCTAAGCGAGGATCTGAATCTCAGGGGAagtattcaaaatcaatgcaatCAAAGGATGAGGATGAGGATGAGGATGAGGAGGGTTtggaagaggaagatgaagagGAGCATGGAGAGACACTGTGTGGGGCATGTGGAGAGAACTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGGAAGTGTGTGAAGATTACGCCTGCCAAGGCCGAGCATATCAAACAGTATAAATGTCCATCGTGCAGCAACAAGAGAGCTCGACCTTG 779 0.43 MEGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPGKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGLAKKQGQVQGKEKSSVSNHSSNKSKSKRGSESQGKYSKSMQSKDEDEDEDEEGLEEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRARP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02264 259 PANTHER CPG BINDING PROTEIN 4 259 IPR045104 GO:0006355|GO:0042393
Bva06g02264 259 MobiDBLite consensus disorder prediction 145 199 - -
Bva06g02264 259 MobiDBLite consensus disorder prediction 163 182 - -
Bva06g02264 259 MobiDBLite consensus disorder prediction 183 199 - -
Bva06g02264 259 ProSiteProfiles Zinc finger PHD-type profile. 203 255 IPR019787 -
Bva06g02264 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 254 IPR013083 -
Bva06g02264 259 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 259 - -
Bva06g02264 259 CDD PHD_AL_plant 205 255 IPR044104 -
Bva06g02264 259 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bva06g02264 259 ProSitePatterns Zinc finger PHD-type signature. 206 252 IPR019786 -
Bva06g02264 259 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Bva06g02264 259 SMART PHD_3 205 253 IPR001965 -
Bva06g02264 259 MobiDBLite consensus disorder prediction 147 162 - -
Bva06g02264 259 Pfam PHD-finger 206 255 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02264 Bva-Chr6 14745355 14748813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02264 1 258 Alfin-like Transcription Factor Family AT3G42790 74.231 4.90e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva06g02264 Alfin 2.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02264 - - vvi:100247536 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02264 06 14745355 14748813 Bva06g02264 06 14745355 14748813 ECH
Bva10g00524 10 4965407 4969085 Bva06g02264 06 14745355 14748813 ECH
Bva06g00558 06 5904052 5908221 Bva06g02264 06 14745355 14748813 ECH
Bva05g01084 05 5565912 5570302 Bva06g02264 06 14745355 14748813 ECH