Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02241 ATGTCCAATTTAACATCTGCATCTAGTGAAATAAGTGCTTCTGCAGGGCCTAAGAATTACCCTCAACACTCCTCTACTTCAACAAATCAAGCATCAGAAcccaaaaagaagagaaatctCCCAGGCAACCCAGACCCAGATGCTGAAGTGATAGCCTTGTCTCCCAAGTCCCTTTTGGCCACCAACCGATTCATTTGTGAGATTTGTAATAAAGGGTTTAAAAGAGATCAAAATCTTCAGCTCCATAGAAGGGGCCACAATTTGCCATGGAAGCTAAAGCAGAGAACAAACAAAGAGACTCTTAGAAAGAAGGTGTACGTGTGCCCAGAGCCAACGTGCGTTCACCATGATCCCTCAAGAGCCCTTGGGGACCTCACTGGGATCAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAATGGAGGTGTGAAAAGTGCTCAAAGCGTTATGCAGTTCAGTCTGACTGGAAAGCTCATTCCAAAATTTGTGGCACCAGAGAGTACAAATGTGACTGTGGAACCATTTTCTCCAGAAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCGTTAGCACAGGAAAGTGCCAGAGCAATCGCGGCAGTGAACCCGCTATTGTCCTCGCAGACCCAACTCCATAGCCATAGCCATAGCCTTCAACCACCATCAGTGAAGAAAGGACGAGACTTCAACCTAAGGCCTGAAAATATTCCACCATGGTTAGCTTGCCCGCAAGTGGGAGAAGCAGCTGGTAGTGGTACACCTCTCCGCTCTTCTGATTTCTCATCAGGATTACTACAAACACCTTTAGAGCAATCCTTAATCCACCAagaaaaccctaaccctagcACCTCGATGCCTTCTTTCCAATCCCCAACTACTCCTCACATGTCTGCCACAGCTTTGCTGCAGAAAGCATCACAAATCGGTGTGACAATGAGCAACACTTCAACTTCACCAGCCATGCTTAGACCCTACCATCAGGCTCACGTGTCTGAATCATGTTCTGCAGGTGCAGCGTATAGCTCCTTGTCAATGCATCCATCTTCAGCTGTTTCAGCTTTGGTTAAGTGTTCACGTGAAGAAATAGGCATTGGGTTTACTCATCATGGGTTACCTGTTTATGGAGCTGGAATCACCTCTGGTTGCTTAGAAGAAGGTATTGCAACAGCAAATGCAGGAGCTGAAGCAGCAccatcttcttttttctatgaTATGATGGGTCCTGTGGGTTCAGCTAGCGGGTTCGAAGATGCACTTAGGGGAATGTTGAATCCAACAAAAGATGGTAACTTTCACGAGCTTCTTTCAAAACCAACAGAACCCCGGCTTGGTAATAACCACAAGGGTGCTCCTGGGGGTGCCAGTGATGAAATGACGAAAGATTTTCTGGGTCTTAAAGCATTTTCTCAAAGAGGCATTTTCAGTTTATCTGGGTTTGATCATTTGGGTTCTTCATCATTCGGCAAGCAAAATCAGAACCAAACACCATTGCAGGATTA 1505 0.4452 MSNLTSASSEISASAGPKNYPQHSSTSTNQASEPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFKRDQNLQLHRRGHNLPWKLKQRTNKETLRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWRCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESARAIAAVNPLLSSQTQLHSHSHSLQPPSVKKGRDFNLRPENIPPWLACPQVGEAAGSGTPLRSSDFSSGLLQTPLEQSLIHQENPNPSTSMPSFQSPTTPHMSATALLQKASQIGVTMSNTSTSPAMLRPYHQAHVSESCSAGAAYSSLSMHPSSAVSALVKCSREEIGIGFTHHGLPVYGAGITSGCLEEGIATANAGAEAAPSSFFYDMMGPVGSASGFEDALRGMLNPTKDGNFHELLSKPTEPRLGNNHKGAPGGASDEMTKDFLGLKAFSQRGIFSLSGFDHLGSSSFGKQNQNQTPLQD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02241 501 Gene3D Classic Zinc Finger 45 112 - -
Bva06g02241 501 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Bva06g02241 501 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 478 - -
Bva06g02241 501 Gene3D Classic Zinc Finger 119 199 - -
Bva06g02241 501 MobiDBLite consensus disorder prediction 429 455 - -
Bva06g02241 501 MobiDBLite consensus disorder prediction 277 297 - -
Bva06g02241 501 SMART c2h2final6 106 136 IPR013087 -
Bva06g02241 501 SMART c2h2final6 141 161 IPR013087 -
Bva06g02241 501 SMART c2h2final6 64 86 IPR013087 -
Bva06g02241 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 478 - -
Bva06g02241 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Bva06g02241 501 MobiDBLite consensus disorder prediction 1 36 - -
Bva06g02241 501 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Bva06g02241 501 MobiDBLite consensus disorder prediction 1 49 - -
Bva06g02241 501 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02241 Bva-Chr6 14642655 14646206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02241 1 317 IDZ Gene Family AT1G55110 56.358 2.57e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g02241 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02241 K25870 - vvi:100257789 573.548