Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02205 ATGATCGGAGTAACAGAATCAAAACGATTCGTTCCCAACCTCCAAATTTCTCCTTGGGAATGGGACCCATCAGAAACTTCGGTTCCACCTGGAGGAACACCCTCTCCTTTCTCCGTTAACTATAATAGCAATGCCAGTGCTGGCGATTATTCTCCTCCTTCGTCCGCTCTTCACGGTTTTCTTTCCAATGATTTAACTCCCGTTGAGTTCGAGTTGGACGAAGAATTTGACATGCCTATTGATGCTTTCTCTAGCGACAATTTCCGCATGTTCGAGTTTAAGGTCCGCAAATGTGCACGTGGCAGATCACATGACTGGACGGAGTGCCCGTACGCACATCCCGGCGAGAAGGCTCGCCGCAGGGATCCTCGGAAATTCAACTATTCTGGCACCGCATGTCCCGAGTTCCGCAAAGGGGACTGCAGTAAAGGGGACTCGTGCGAGTTTTCTCACGGAGTCTTCGAAACCTGGCTGCACCCAGCTCGTTACAGGACTCAGCTCTGCAAAGACGGAACAAATTGTCGCCGCCGTGTTTGTTTCTTCGCTCACACTCCGGAGCAATTGCGGGTCCTGACTCACGGGTCGAGTGAACCATCGGACGGGTCACCGATTCGCCATGCTGTTGGTTCACCCCGTTGGACTAATGCTGCGGCTTTTGTTTCATCGCCTACTTCGGTGCTAGACTCGTCACCACTCTCTGACTCGGCACCCACAACGCCCGCCAATTGCCGTAAATACGGCGGCGCATCTTTCGACGCGGTTAGTGAAATAGTTACCGCAATGCGTAATGTTCAACTGGATAACACCAACACGCCTGCTAGTGCCCGGAGTCGCCACTGTGGACCCGTATTTGGTCAGACTATCCGACCAGGGCGTTTCAGCCTTACCTCAAGTCCAACAAAGACTAAATCAGGACTTGACATCTGGGATCAGAGCTCCAAAGAAGAGCCTCCAATGGAGAGGGTACAATCCGGAAGAGACATCAGAGCCAGAATGTACGCCAAACTCAGTAAGGAGAACTCTTTAGGCGGAACGACACGGGGGTTTCAACCCCTGATTTTGGATGGATCTCCGAACTGGTG 1082 0.5213 MIGVTESKRFVPNLQISPWEWDPSETSVPPGGTPSPFSVNYNSNASAGDYSPPSSALHGFLSNDLTPVEFELDEEFDMPIDAFSSDNFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKFNYSGTACPEFRKGDCSKGDSCEFSHGVFETWLHPARYRTQLCKDGTNCRRRVCFFAHTPEQLRVLTHGSSEPSDGSPIRHAVGSPRWTNAAAFVSSPTSVLDSSPLSDSAPTTPANCRKYGGASFDAVSEIVTAMRNVQLDNTNTPASARSRHCGPVFGQTIRPGRFSLTSSPTKTKSGLDIWDQSSKEEPPMERVQSGRDIRARMYAKLSKENSLGGTTRGFQPLILDGSPNW 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02205 360 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Bva06g02205 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 345 - -
Bva06g02205 360 MobiDBLite consensus disorder prediction 21 40 - -
Bva06g02205 360 PANTHER UNKEMPT FAMILY MEMBER 9 345 IPR045234 -
Bva06g02205 360 Gene3D - 127 190 - -
Bva06g02205 360 MobiDBLite consensus disorder prediction 290 307 - -
Bva06g02205 360 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Bva06g02205 360 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Bva06g02205 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Bva06g02205 360 MobiDBLite consensus disorder prediction 270 324 - -
Bva06g02205 360 MobiDBLite consensus disorder prediction 308 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02205 Bva-Chr6 14462935 14464295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02205 69 236 C2H2 Transcription Factor Family AT5G12850 55.294 2.61e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g02205 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02205 - - zju:107420623 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02205 06 14462935 14464295 Bva06g02205 06 14462935 14464295 ECH
Bva10g00597 10 5306759 5308216 Bva06g02205 06 14462935 14464295 ECH