Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02202 ATGGAGGAATATAGTAATCACCTGAGTGAAAACGCAGCGCCAAGGTCAAATTTCCTGTACTCTTCACCTGCTGTTGGGTTCGGAAGAACGACCAGTGGCAGTTCAAGCGTTGGAAACCATCATCACCAGCTGCCTATAAACACCTTTCATCTTCAATCGGGTGGATCAGAGTGTTTCCAATCCGATCAATCTCACCCAGCTGTCAAGACCGAAGCCAATACCTCGCAGCCAGCTCAATTTTTTCACTATCCACTAATGAGAGGTAATCTTCAACTGATGCAGCATCAACAGCACAACCATGGAGGCAGCCAAAGCTCTAACGAAGTCGAGGCCATAAAAGCTAAAATCATTGCTCATCCTCAGTACTCCAACCTTCTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCACCACCGGAAGTGGTGGCGCGTCTAGCTGCGGCTCGGCAGGAGTTCGAGGCACGGCATCGCGCTTCCGTTAGTTCGAGGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATCGAGAGGAATTGACCAGGCCAATACAAGAGGCAATGGAATTCATGCGAAGAATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTTTCTGATGATAAGTATGAAGGCGCTGGCTCATCTGAAGAGGATCAAGACAACAGTGGTGGCGAAACAGAACTGCCAGAGATTGATCCCCGAGCTGAAGACCGCGAACTTAAAAATCACTTGTTGAGGAAATATAGTGGTTACTTAAGTAGCCTTAAGCAAGaactttcaaagaaaaagaagaaaggaaaattgccTAAAGATGCTAGGCAGAAGTTACTTAGCTGGTGGGAATTACACTACAAGTGGCCTTATCCTTCGGAATCGGAGAAAGTGGCATTGGCTGAATCAACTGGTTTGGACcagaagcaaataaataactgGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCACAGAACGCAACTCTCTATATGGATGGTCACTATATGGCTGATGGTCACTACCGTCTAGGGCCATG 1115 0.4448 MEEYSNHLSENAAPRSNFLYSSPAVGFGRTTSGSSSVGNHHHQLPINTFHLQSGGSECFQSDQSHPAVKTEANTSQPAQFFHYPLMRGNLQLMQHQQHNHGGSQSSNEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFEARHRASVSSRETCKDPELDQFMEAYYDMLVKYREELTRPIQEAMEFMRRIETQLNMLCNGPVRIFSDDKYEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMADGHYRLGP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02202 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Bva06g02202 371 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Bva06g02202 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 363 - -
Bva06g02202 371 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 363 - -
Bva06g02202 371 MobiDBLite consensus disorder prediction 222 250 - -
Bva06g02202 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Bva06g02202 371 Gene3D - 278 340 - -
Bva06g02202 371 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Bva06g02202 371 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Bva06g02202 371 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677|GO:0005634
Bva06g02202 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Bva06g02202 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Bva06g02202 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Bva06g02202 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Bva06g02202 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Bva06g02202 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Bva06g02202 371 SUPERFAMILY Homeodomain-like 274 348 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02202 Bva-Chr6 14434384 14439269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02202 58 371 Homeobox Transcription Factor Family AT4G08150 71.472 1.87e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva06g02202 KNOX2 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02202 - - gmx:100807602 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02202 06 14434384 14439269 Bva06g02202 06 14434384 14439269 ECH