Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02184 ATGGATTCTGATCAAGCGAAGCTGTTTGTTGGTGGCATTTCTCGGGAGACAACCGAAGATATTTTGAAAGACCATTTTGCCAAGTACGGCTCTGTCCTTGGTTCCATGATTTCTCTTGACCGGAGCACCAGAAATCCTAGAGGTTTTGGCTTCGTCAGGTTCTCTGATCTTTCTGCAGCCGATAAAGCCCTTCAAGATACGCATGTTATACTGGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGCGAACAACAATACCATAACCAACCACAGAGTAGAGGGACGAGTAACTGTTGTAGTAATGACAGTAGCAGTAACCAGATTAGAACTAAAAAGATTTTTGTAGGAGGCTTATCAGCTAGTGTCTCTGAGGAGgagtttaagaaatattttgagaagttCGGTAGAATAACAGACGTAGTGGTAATGCAGGATAATATAACTCACCGTCCTAGGGGGTTTGGGTTCATCACTTTCGACTCAGAAGAATCTGTCGAAAATGTTATGCTCAATAGCTTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGGGCTGTTCCAAAAGAGGGGAACAATGCCAATGATGGTGTTAATAGAATGGGATTTAAGGCTGGAAGAGGAGCACCTAAAAATTATGCTCACTATCCTAGTTTTATGCTCCCTGGCTTTGCTCCCGTTCCCTGTTATAGTAATGATGGAGTATATTACTATGGATCAAACATCTATGGTTGTTGGTACCCTATGGGAGGGTATGGGGGGGATGGCTATGCAGTTCCATCTAGTGCTCCTAGGAACTTCTGGTATGGACCCATGGTAACCAGTGCTCAGGCATGTCAGTCGCCTTATGTCCATGCTACTTCTAGTCCTGCATATGTGGGTGGTAGGTTTGGTTTAGTTAGTACTGGAACCGGTGGGGTAACTGCCATTGCTGGGCaaccaatttg 953 0.4313 MDSDQAKLFVGGISRETTEDILKDHFAKYGSVLGSMISLDRSTRNPRGFGFVRFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQYHNQPQSRGTSNCCSNDSSSNQIRTKKIFVGGLSASVSEEEFKKYFEKFGRITDVVVMQDNITHRPRGFGFITFDSEESVENVMLNSFHDLNGRQVEVKRAVPKEGNNANDGVNRMGFKAGRGAPKNYAHYPSFMLPGFAPVPCYSNDGVYYYGSNIYGCWYPMGGYGGDGYAVPSSAPRNFWYGPMVTSAQACQSPYVHATSSPAYVGGRFGLVSTGTGGVTAIAGQPI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02184 317 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 308 - -
Bva06g02184 317 MobiDBLite consensus disorder prediction 84 105 - -
Bva06g02184 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Bva06g02184 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bva06g02184 317 Gene3D - 86 207 IPR012677 -
Bva06g02184 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Bva06g02184 317 Gene3D - 4 85 IPR012677 -
Bva06g02184 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva06g02184 317 SUPERFAMILY RNA-binding domain, RBD 3 103 IPR035979 GO:0003676
Bva06g02184 317 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 308 - -
Bva06g02184 317 SUPERFAMILY RNA-binding domain, RBD 107 209 IPR035979 GO:0003676
Bva06g02184 317 MobiDBLite consensus disorder prediction 82 105 - -
Bva06g02184 317 SMART rrm1_1 114 186 IPR000504 GO:0003723
Bva06g02184 317 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02184 Bva-Chr6 14334914 14336760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02184 2 250 Eukaryotic Initiation Factors Gene Family AT3G16380 27.778 1.39e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02184 K14411 - gmx:100786665 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02184 06 14334914 14336760 Bva06g02184 06 14334914 14336760 ECH