Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02172 ATGCATCTGTACCAGCCATCTAGCGGGAGTAAAAACGGGGATGGAAAGCTTGATGCGGGCGGTGGCGCCGAGGTGCTAGATGTAGAAACCGCTGTTAAAGGTGGGGTTTTGGGTGTTGGAGCAGTGGGAACTGGCGGTGGCGGCGGCATCGATGACAAATTGAATCTGAAGGTGTTGATTGAAGAGCTCGATTCAATTGATGTTCCGTCGGTGTTTATTTGCCCTATCTCCCTGGAGCCAATGCAAGAGGCCGTGACCCTTTGCACGGGACAGACCTACGACAGATCCAATATTCTGAAATGGTTCTCTCTTGGTCACAACACTTGTCCCGCGACAATGCAGGAGCTTTGGGACGATTCAGTGACGCCCAACAAAACCCTGAATCAGTTAATTTATAGCTGGTTCTCTCAGAAGTACCTGACAATGAAGAAGAAGTTCGAGGATGTGCAAGGAAGGGCTTTAGAGCTCTTGGAGACTCTCAAGAAGGTTAAGGGTCAAGCCAGAGTTCAAGCTCTTAAAGATCTTAGACAAATCGTTGCTGCCCATGCCTCCACAAGGAAGACAGTAGCGGAAAACGGTGGGCTTTCCTTGATTTCATCTTTACTGGGTCCTTTCACTTCGCACGCGGTTGGCTGTGAAGCAATAGGTATACTTGCGAATTTGGATTCGAGTTCGGAATTGAGGGCCAATCTGATGCGTCCGGCCAAGATATCATTGGTAGTTGATATTATGAATGAGGGAACAGTTGAGACAAAGTTAAATTGTGCGAAATTGATTGGGATGCTGTTGATGGAAGGGAATGATTCTGTGACAGAAATATTCTCAAGCTTGAGTCTTTTGGTTGGATTATTGAGGTTAGTAAGAGACAAGAGACACCCAACTGTAGTGTTCACCGGGCTCATATTACTCAAGACTATATGTTCCCATGAATCAGTTAGAAGCTCAATTATCAGAATAGGAGCAGTTCCACAATTGATTGAGCTTTTGCCCAGTTTGAATAATGAGTGCTTAGAGATAGCCTTGTATATTCTAGAGGTATTGTCAACTATTCCAGAGGGAAGATTGGCTATGAAAGAATGTCCAAACATTATACCAAACGTGGTGAAGCTGTTGATGAGAGTCTCAGAGAGCTGCACTCAGTTCGCATTGACAATATTATGGGCAATCTACAAGCTAGCACCCGAAGAATGTGCTTCACAAGCAGTGGAGGCTGGCTTGGCGCCTAAGCTGCTACTTGTAATTCAGAGTGGTTGCAACCCAGTGTTGAAGCATATGTCTGCTGAGTTTTTGAAACTGTGCAGTCTCAATTACTCTACTAGTATCTTGATTTCAAAGTGTATGCTCACCACCACGATACAatg 1361 0.4519 MHLYQPSSGSKNGDGKLDAGGGAEVLDVETAVKGGVLGVGAVGTGGGGGIDDKLNLKVLIEELDSIDVPSVFICPISLEPMQEAVTLCTGQTYDRSNILKWFSLGHNTCPATMQELWDDSVTPNKTLNQLIYSWFSQKYLTMKKKFEDVQGRALELLETLKKVKGQARVQALKDLRQIVAAHASTRKTVAENGGLSLISSLLGPFTSHAVGCEAIGILANLDSSSELRANLMRPAKISLVVDIMNEGTVETKLNCAKLIGMLLMEGNDSVTEIFSSLSLLVGLLRLVRDKRHPTVVFTGLILLKTICSHESVRSSIIRIGAVPQLIELLPSLNNECLEIALYILEVLSTIPEGRLAMKECPNIIPNVVKLLMRVSESCTQFALTILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSTSILISKCMLTTTIQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02172 453 SUPERFAMILY RING/U-box 62 138 - -
Bva06g02172 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 141 IPR013083 -
Bva06g02172 453 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Bva06g02172 453 Gene3D - 142 447 IPR011989 -
Bva06g02172 453 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Bva06g02172 453 PANTHER WDSAM1 PROTEIN 41 452 IPR045185 GO:0061630
Bva06g02172 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 452 - -
Bva06g02172 453 SUPERFAMILY ARM repeat 146 437 IPR016024 -
Bva06g02172 453 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Bva06g02172 453 CDD RING-Ubox_PUB 72 114 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02172 Bva-Chr6 14265376 14267460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02172 1 453 U-box Gene Family AT3G49810 61.810 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02172 - - jre:109007095 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02172 06 14265376 14267460 Bva06g02172 06 14265376 14267460 ECH