Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02106 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCTCCCTCGGCTACGAACGGTGTGGTACCGACTCCAGGCGCCAACCAGTTTGTGACTACGTCTTTATATGTCGGGGATCTTGACCAGAATGTGAACGATTCGCAGCTTTACGATCTCTTCAACCAGGTCGGGCAAGTTGTTTCTGTTCGGGTCTGTAGGGACTTGACCAGCCGTCGATCCCTCGGTTACGGATATGTTAATTACAGTAACCTTCAGGATGCGGCAAGAGCAATTGATGTGCTGAATTTCACTCCACTGAACAACAAACCAATTAGGATAATGCTTTCTCATCGGGATCCTAGTATTCGGAAGAGTGGTAcagcaaatatatttattaagAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGAGACATTTTCTGCTTTTGGGTCTATTCTTTCTTGCAAGATAGCAACTGATGCTTTTGGCCAGTCCAAAGGCTATGGTTTTGTACAATTTGACAATGAGGGGTCTGCACAGAATGCAATTGACAAGTTAAATGGCATGCTGCTAAATGATAAACAGGTCTATGTAGGACATTTCCTACGAAAGCAGGATAGAGAAAGTGTTTTTAGTaggacaaaatttaataatgtgtATGTGAAAAACCTGTCAGAGTCTATGACAGATGAAgacttgaagaaaatttttggagAATATGGTACCATTACTAGTGCTGTAGTAATGAGAGATGCAGATGGCAAATCGAAGTGCTTTGGTTttgtcaattttgaaaatgcaGATGATGCTTGTAGAGCTGTTGAGGCACTTAACGGaaagaaatttgatgataAGGAGTGGTACGTTGGAAAAGCCCAGAAAAAATCTGAAAGAGAGCTTgaactgaaagaaaaatttgagcAGAGTGTGAAGGAAGTTGTTGACAAATCTCAAGGCGTAAACTTGTATCTCAAGAACTTAGATGATAGCATTGATGATGAAAAACTTAAGGAACTGTTCTCTGAGTTTGGTACAATAACCTCATGCAAGGTTATGCGGGACCCAAATGGAATCAGTAGAGGATCAGGTTTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTGCGGAGATGAATGGTAAAATGGTTGCTGGAAAACCTCTGTATGTTGCTCTTGCACAAAGGAAAGAAGATAGAAGAGCAAGGTTACAGGCTCAATTTTCGCAAATGAGGCCTGTTGCAATGTCTCCTGTTGCCTCTCGGATGCCAATGTATCCTCCTGGTGCTCCAGGTCTGCCACAACAATTTTTGTATGGGCAAGCACCTCCAGCCATCATTCCTCCACAAGCGGGGTTTGGTTACCAGCAACAACTGGTTCCTGGAATGAGGCCAGGCGGAGGTCCAATGCCAAACTTCTTTGTCCCCTTGGTTCAGCAGGGCCAACAAGGCCAGCGCCCCGGTGGACGCCGAGGAGCAGGCCCTGTACAACAATCCCAGCAACCAGTGCCACTGATGCAGCATCAGaTGCTTCCAAGGGGACGTGTCTACCGTTACCCATCTGGTCGCAACATGCAAGATGTTCCAATGCCAGGTGTTGCAGGAGGAATGCTTCCAGTCCCCTATGATATGGCTGGTGTGCCAATTCGGGATGCAGTGGGTCAGCCAATGCCCATTCAAGCCTTGGCAACTGCTCTTGCAAATGCTCCTCCTGAGCAGCAGAGGACTATGTTGGGCGAAGCTTTATATCCTCTTGTAGATCAGTTGGAGCATGATGCTGCTGCCAAGGTCACAGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTGATAGAGTCACCAGACGCTCTTAGGGCCAAAGTGTCTGAGGCCATGGATGTCCTTAGAAATGTTGCCCAGCAGCAAGTTAACAGCCCTGCTGATCAATTGGCCTCGCTATCTCTCAACGACAATCTTGTATCATA 1949 0.4423 MAQIQVQHQSPPSATNGVVPTPGANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNLQDAARAIDVLNFTPLNNKPIRIMLSHRDPSIRKSGTANIFIKNLDKAIDHKALHETFSAFGSILSCKIATDAFGQSKGYGFVQFDNEGSAQNAIDKLNGMLLNDKQVYVGHFLRKQDRESVFSRTKFNNVYVKNLSESMTDEDLKKIFGEYGTITSAVVMRDADGKSKCFGFVNFENADDACRAVEALNGKKFDDKEWYVGKAQKKSERELELKEKFEQSVKEVVDKSQGVNLYLKNLDDSIDDEKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQMRPVAMSPVASRMPMYPPGAPGLPQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGGPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQSQQPVPLMQHQMLPRGRVYRYPSGRNMQDVPMPGVAGGMLPVPYDMAGVPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALRAKVSEAMDVLRNVAQQQVNSPADQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02106 649 SUPERFAMILY PABC (PABP) domain 493 641 IPR036053 GO:0003723
Bva06g02106 649 MobiDBLite consensus disorder prediction 473 493 - -
Bva06g02106 649 CDD RRM1_I_PABPs 31 110 - -
Bva06g02106 649 SUPERFAMILY RNA-binding domain, RBD 208 290 IPR035979 GO:0003676
Bva06g02106 649 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bva06g02106 649 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bva06g02106 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bva06g02106 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bva06g02106 649 Gene3D - 309 411 IPR012677 -
Bva06g02106 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 624 IPR006515 GO:0003723
Bva06g02106 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Bva06g02106 649 CDD RRM3_I_PABPs 208 287 - -
Bva06g02106 649 MobiDBLite consensus disorder prediction 1 21 - -
Bva06g02106 649 Gene3D - 204 308 IPR012677 -
Bva06g02106 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bva06g02106 649 Gene3D - 112 203 IPR012677 -
Bva06g02106 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bva06g02106 649 SUPERFAMILY RNA-binding domain, RBD 309 407 IPR035979 GO:0003676
Bva06g02106 649 Gene3D - 547 630 - -
Bva06g02106 649 SMART poly_2 563 626 IPR002004 GO:0003723
Bva06g02106 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bva06g02106 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bva06g02106 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bva06g02106 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bva06g02106 649 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Bva06g02106 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bva06g02106 649 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bva06g02106 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bva06g02106 649 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bva06g02106 649 Gene3D - 1 111 IPR012677 -
Bva06g02106 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Bva06g02106 649 PANTHER RNA BINDING PROTEIN 19 633 - -
Bva06g02106 649 PANTHER POLYADENYLATE-BINDING PROTEIN 19 633 - -
Bva06g02106 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bva06g02106 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bva06g02106 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bva06g02106 649 CDD RRM4_I_PABPs 311 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02106 Bva-Chr6 13945577 13949735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02106 29 648 Eukaryotic Initiation Factors Gene Family AT1G49760 70.886 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02106 K13126 - gmx:100784442 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02106 06 13945577 13949735 Bva06g02106 06 13945577 13949735 ECH