LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g02050	ATGGCTATCCGGGTTACTTTCAACTTCTCTGGTTATGTGGCCCAGAACCTGGTTTCGTCGGCCGGTACTCGTATGAGTAATTCGCGCTGCTTTCAGGAATGCTGGATCAGGTCTCGCATATTCGGCACGAACCAGAAACCCGATCTCGATCCCTCTGTTAGCGTCCGTAACTATCGGTCCGATTTCAGACATCCGAAATCGAATTGCTGGGTTAGGCATTCAGCTTCAGCTTATGCAACTATCGCTGGGGAAATTCTTGGCGACAATTACAAAAATCCGATCATTCTGTCTTTGATTTCGATGATGAAGTCAACGATTTCTGTATCGGTTTCATCCACTACGACTATGGGTATCTATGGTATTTCCCCGTTTAAGGCCGCTTCGGTTATACCCTTTTTACAGGGATTGAAGTGGCTTCCCTGTAACGAGTCGTTGCCTGTTCCTACGAGCCATGAAGTGGATAAAGGTGGAACACAGTGTTTTGATGATAAGGATTCTGGATTTAGTCACGAGAGTTTTGAGAAGACGAGTTGGCTTTCACGCTTGTTGAATGTCTGCTCTGAAGATGCAAAGGCCGTGCTTACTGCTGTTActgttaattttctatttcggTCGTTTTTGGCTCAACCAAGATCGATTCCCTCGTCTTCTATGTGCCCAACTCTGGATGTGGGTGACCGTATTTTAACAGAAAAGGTTTCTTTAGTGTTCAGGAAGCCTGATGTTTCAgatatagttatatttaaagCCCCTCCTATTCTACAGGAATTTGGGTTTAGTTCTTCTGATGTATTTATCAAACGTATTGTGGCAAAGGCTGGGGACTGCGTTGAAGTCCGTGATGGAAAACTACTAGTGAACGGTGTTCCCCAAGAAGAGGAATTTGTTTTAGAGCCACTTGCTTATGAGATGGATCCATTAGTAGTGCCAGAAGGTTATGTCTTTGTGCTGGGAGACAATCGTAATAACAGCTTTGATTCACATAACTGGGGTCCACTCCCTGTCGAGAACATCGTTGGTAGATCAATGCTTCGAGAACGTTG	1043	0.4362	MAIRVTFNFSGYVAQNLVSSAGTRMSNSRCFQECWIRSRIFGTNQKPDLDPSVSVRNYRSDFRHPKSNCWVRHSASAYATIAGEILGDNYKNPIILSLISMMKSTISVSVSSTTTMGIYGISPFKAASVIPFLQGLKWLPCNESLPVPTSHEVDKGGTQCFDDKDSGFSHESFEKTSWLSRLLNVCSEDAKAVLTAVTVNFLFRSFLAQPRSIPSSSMCPTLDVGDRILTEKVSLVFRKPDVSDIVIFKAPPILQEFGFSSSDVFIKRIVAKAGDCVEVRDGKLLVNGVPQEEEFVLEPLAYEMDPLVVPEGYVFVLGDNRNNSFDSHNWGPLPVENIVGRSMLRER	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g02050	347	CDD	S26_SPase_I	209	341	IPR019533	GO:0004252\|GO:0006465
	Bva06g02050	347	ProSitePatterns	Signal peptidases I serine active site.	215	222	IPR019756	GO:0004252\|GO:0016021
	Bva06g02050	347	Pfam	Signal peptidase, peptidase S26	190	343	IPR019533	GO:0004252\|GO:0006465
	Bva06g02050	347	TIGRFAM	sigpep_I_bact: signal peptidase I	192	344	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva06g02050	347	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	206	222	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva06g02050	347	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	309	328	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva06g02050	347	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	265	277	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva06g02050	347	SUPERFAMILY	LexA/Signal peptidase	204	344	IPR036286	-
	Bva06g02050	347	Gene3D	Umud Fragment, subunit A	215	347	-	-
	Bva06g02050	347	PANTHER	SIGNAL PEPTIDASE I	1	345	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva06g02050	347	ProSitePatterns	Signal peptidases I signature 3.	314	327	IPR019758	GO:0004252\|GO:0016021
	Bva06g02050	347	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	345	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g02050	Bva-Chr6	13679893	13682142	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g02050	218	345	MADS-box Gene Family	AT1G29960	33.077	1.73e-12	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g02050	K03100		-	mnt:21397579	491.115

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g02050	06	13679893	13682142	Bva06g02050	06	13679893	13682142	ECH