Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02033 ATGGGTTGGCTaagcaaattttttaaaagctcCGACCACGGAATTTCAGAAGGGCATTATAACGCGAATTATGGAGATGATACAGATTACTACTTACCATCAACTTCAGGGGAAGTTTGGTCAGAGAACGAGAATGAAGATATAGATCGTGCTATAGCATTATCTCTCGTAGAAGAAAACCAGAAAGGGAAAAATGTGAATGACCACAAGTTACAATCAGAAGAAGACGAACATCTCGCTAGAGCTCTACAAGAAAGCCTAAATGTTGAGTCTCCTCCCAGATATGGAAGTGGAAATATGTATCAACCAGTTCCAGTGTACTTTCCAATGGGATCCAGgATTTGTGCTGGTTGCAATACTGAGATTGGTTATGGACGATACCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGTTGCGCTTGTAATTTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAGATCTTGCTACAAGGAGAGCTACCATCCAAAATGTGATGTCTGCAAACACTTTATTCCAACAAACGCTGCTGGTCTTATTGAATATAGGGCGCATCCATTTTGGATTCAGAAATATTGCCCTTCTCATGAACATGAGGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGCCACGAGATACAAGATACTGTGCTCTAAATGATGGTCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCAATCATGGAAACAAATGAATGCCAACCCCTTTATAATGATGtgcaaaaattttatgagGATCTAAATATGAAACTGGAACAGAAAATTCCATTACTCCTGGTTGAAAGACAAGCACTAAATGAAGCCAGAGAGGGGGAGAAAAATGGCCACTATCACATACCTGAGACCAGAGGACTCTGCCTTTCTGAGGAACAGACTATCAGCACTATTTTAAGGCGACCTAGGTTTGGAACGGGGAATCTGGCAGCAGACATGAGAACGGGACCCTACAAACTAACTAGACGCTGTGAAGTGACAGCAATTCTTATTTTGTATGGTCTCCcaagGTTGCTTACTGGATCTATCTTGGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTACCGAACTCTCAGTCAAGATGTCGAGGAAGGTATATGTCAGGTTATGGCTCATATATGGCTGGAGGCCGAGCTTTCATCTGCATCAGGCAACAACTTTGTATCAACCCCATCCTCATCTGCTTCCTATGCATCTAGAAAAGGTAAACGACCAGAATTTGAGAGGAAACTTGGAGAGTTCTTCAAGTACCAGATTGAATCAGACATTTCCCCCGTTTATGGAGATGGGTTTAGAGCAGGTCAACAAGCAGTACATAAGTATGGTCTAGAAAGGACCCTTCACTATATCTGGTTGACAGGGAGTTATCCATATTG 1433 0.4173 MGWLSKFFKSSDHGISEGHYNANYGDDTDYYLPSTSGEVWSENENEDIDRAIALSLVEENQKGKNVNDHKLQSEEDEHLARALQESLNVESPPRYGSGNMYQPVPVYFPMGSRICAGCNTEIGYGRYLNCLNAFWHPECFRCCACNLPISDYEFSTSGNYPYHRSCYKESYHPKCDVCKHFIPTNAAGLIEYRAHPFWIQKYCPSHEHEGTPRCCSCERMEPRDTRYCALNDGRKLCLECLDSAIMETNECQPLYNDVQKFYEDLNMKLEQKIPLLLVERQALNEAREGEKNGHYHIPETRGLCLSEEQTISTILRRPRFGTGNLAADMRTGPYKLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVMAHIWLEAELSSASGNNFVSTPSSSASYASRKGKRPEFERKLGEFFKYQIESDISPVYGDGFRAGQQAVHKYGLERTLHYIWLTGSYPY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02033 477 CDD LIM_DA1 115 167 - -
Bva06g02033 477 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Bva06g02033 477 Pfam Protein DA1 265 470 IPR022087 -
Bva06g02033 477 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Bva06g02033 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Bva06g02033 477 Gene3D Cysteine Rich Protein 108 173 - -
Bva06g02033 477 Pfam LIM domain 115 168 IPR001781 -
Bva06g02033 477 PANTHER PROTEIN DA1-RELATED 2 1 477 IPR045218 -
Bva06g02033 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Bva06g02033 477 SMART uim 43 62 IPR003903 -
Bva06g02033 477 SMART uim 74 93 IPR003903 -
Bva06g02033 477 SMART lim_4 114 166 IPR001781 -
Bva06g02033 477 PANTHER PROTEIN DA1-LIKE 1 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02033 Bva-Chr6 13575640 13580728 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva06g02033 DA1-like 1.1e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02033 - - mnt:21404090 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02033 06 13575640 13580728 Bva06g02033 06 13575640 13580728 ECH