Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02030 ATGGTCTCGGTTCTAGAAAAGGATGTGATTAGATCCAACCTCTCGTCTACACCTTTCCTTTTCGCCTATAGGATCGATCGGTTCGCTGGATCGGTCGGTCACTCTTCGTTTTTGCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTGCTCAAACAATAGTAACAACAATGACGCAGCCAGTTTTGAATGCAATATTTGCTTTGACTTAGCTCAAGACCCAATAATTACTTTGTGTGGTCATCTATTTTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCATTCACAATCACGAGAATGCCCAGTGTGCAAAGCCCTCGTTGAAGAGGAGAAGTTGGTTCCTCTGTACGGGAGAGGAAAGACATCAACTGACCCAAGATCGAAGTCTATTCCCGGTGTTAATATTCCACATCGTCCAGCTGGTCAGAGACCTGAAACTGCTCCTCCCCCCGAATCAAATCATTTTCCTCAACATGGGTTTGGATTTATGGGTGGGTTGGGAGGATTTGCACCAATGGCTACAGCAAGATTTGGGAATTTTACATTATCTGCTGCATTTGGTGGTTTAATTCCATCCTTATTTAACTTTCAATTTCATGGGTTTCATGATCCAACCATGTACGGTGGAACAGCTGGTTATCCTTATGGATTTTCTCATTCATTTCACGGTGGCCATGTCCATGGATATCCTCGTCACACTGGTCAAGGGCAACAAGATTATTATCTGAAGCGGCTGCTTctgtttgttgttttctgtGTCGTTCTTGCTTTCATTTGGCAATA 806 0.4367 MVSVLEKDVIRSNLSSTPFLFAYRIDRFAGSVGHSSFLQMASGFGESTSRSPPSPSCSNNSNNNDAASFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNHFPQHGFGFMGGLGGFAPMATARFGNFTLSAAFGGLIPSLFNFQFHGFHDPTMYGGTAGYPYGFSHSFHGGHVHGYPRHTGQGQQDYYLKRLLLFVVFCVVLAFIWQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02030 268 MobiDBLite consensus disorder prediction 125 160 - -
Bva06g02030 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 41 268 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva06g02030 268 SMART ring_2 71 111 IPR001841 -
Bva06g02030 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 125 IPR013083 -
Bva06g02030 268 ProSiteProfiles Zinc finger RING-type profile. 71 112 IPR001841 -
Bva06g02030 268 SUPERFAMILY RING/U-box 68 124 - -
Bva06g02030 268 Pfam Zinc finger, C3HC4 type (RING finger) 71 111 IPR018957 GO:0046872
Bva06g02030 268 PANTHER OS12G0636000 PROTEIN 41 268 - -
Bva06g02030 268 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
Bva06g02030 268 CDD RING-HC_AtRMA_like 69 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02030 Bva-Chr6 13562942 13565084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02030 55 251 C3H Transcription Factor Family AT1G19310 67.805 3.37e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02030 K10666 - gmx:100527488 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02030 06 13562942 13565084 Bva06g02030 06 13562942 13565084 ECH