Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02016 ATGAAAACTATGGCTGAGCTTGAGAATCATTCGTCAATGACAGCTTCAACAGTTTCTGGAGAAGCTACTTTATCGTCCTCTGGTTTCCATAGCAATCCCGAAGCACGACCACCACCCAAAAAGAAGCGAAACCTTCCCGGAATGCCAGatCCAGATGCTGAGGTGATTGCTTTATCGCCAAAAACACTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAATAAAGGTTTTCAACGAGACCAGAACTTGCAGCTCCACCGACGGGGTCACAACCTTCCGTGGAAGCTCCGGCAGCGAACGAGTAAGGAAATTCGCAAGAGAGTGTACGTGTGCCCTGAGCCTTCCTGCGTCCACCACAACCCTTCGAGAGCGCTTGGTGACCTCACCGGCATAAAAAAGCATTTCTGTAGAAAACACGGCgaaaagaaatggaagtgCGAGCGTTGCTCTAAGAAATATGCAGTACAGTCTGATTGGAAGGCCCATATAAAGACATGCGGAACTAGAGAGTATAAATGCGACTGCGGCACCTTGTTCTCTagGAGGGATAGCTTCATTACGCACCAAGCTTTCTGTGATGCTTTAGCACAGGAGAGTGCAAGGGCCCAGACCCAAACGCAAACCCTAGCCATAGGTGGTGGCTCTAGCAGCAAAGTTGCTGTGACTTCACCACCGCAGTCTCCACTTACTCCATCCACTTCCGTCGTGTCTCCAGCTTTGTCCATTCAGAGCTCAGAAATCCCGGAAAACTCAGGGAAGCTGTCGCCACCAACGTGTTCAAGGAATGCAGTGACAAGCCGCACTACGTCCTGTTCGACCAGTGTTTTTGCAAGTGTATTTGCATCCTCGAGTGCAGCATCGACTTCCCAATCATCATCGGCATCGTCATTCTCCAGTCTGATGTCCAGCTTAGCCCGCTCGGACTGTCCCACCACATTCTCAACAATCTCTGCCATAGAGCCCACAtccctttctctctccacATCACTCTATCTATCAACTAATGACTCTTCTCTCTTGGCGGACCAGCAGGGCCCTCGTCAATACAGTGCATCTCCACAACCAGCATTGTCTGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCCACGACATCCAATGCATCGTTTCTTCGGGGTTTAGGCCTAGCAACAGCATCTTTTTCTGGACAAGATGACAGTGCCGCGAAAAACTGGAATAGCCATGTCAAGGTAGAGAACAATTCCCTTGGCCTTGGACTTGGCTCTTCTGGCGATGCAGGTTTTGCAGATATGTCATTTGCGAGCCAGCCCATGACCCGTGATCTTCTCGGTTTAAGCATAGGTGGTGCAGCTGGCGGGGCCACCAGGGGTGGGCATATATCTGCTTTGCTTACTTCTCTTGGTGGTGCCTTCGACGTTGCAGAAGGAGAGAGGAGTTCGCCTGCACAGACGTGGGAAGATGCACAACAAAGAGAGGCAACGAACCAGCCTTGCTCTAGAGTGTA 1493 0.4977 MKTMAELENHSSMTASTVSGEATLSSSGFHSNPEARPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHIKTCGTREYKCDCGTLFSRRDSFITHQAFCDALAQESARAQTQTQTLAIGGGSSSKVAVTSPPQSPLTPSTSVVSPALSIQSSEIPENSGKLSPPTCSRNAVTSRTTSCSTSVFASVFASSSAASTSQSSSASSFSSLMSSLARSDCPTTFSTISAIEPTSLSLSTSLYLSTNDSSLLADQQGPRQYSASPQPALSATALLQKAAQMGATTSNASFLRGLGLATASFSGQDDSAAKNWNSHVKVENNSLGLGLGSSGDAGFADMSFASQPMTRDLLGLSIGGAAGGATRGGHISALLTSLGGAFDVAEGERSSPAQTWEDAQQREATNQPCSRV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02016 497 Pfam Zinc-finger of C2H2 type 69 91 - -
Bva06g02016 497 MobiDBLite consensus disorder prediction 478 497 - -
Bva06g02016 497 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 12 472 - -
Bva06g02016 497 Gene3D Classic Zinc Finger 49 114 - -
Bva06g02016 497 MobiDBLite consensus disorder prediction 207 236 - -
Bva06g02016 497 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Bva06g02016 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Bva06g02016 497 Gene3D Classic Zinc Finger 122 204 - -
Bva06g02016 497 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Bva06g02016 497 SMART c2h2final6 145 165 IPR013087 -
Bva06g02016 497 SMART c2h2final6 69 91 IPR013087 -
Bva06g02016 497 SMART c2h2final6 110 140 IPR013087 -
Bva06g02016 497 MobiDBLite consensus disorder prediction 1 53 - -
Bva06g02016 497 MobiDBLite consensus disorder prediction 1 32 - -
Bva06g02016 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 472 - -
Bva06g02016 497 MobiDBLite consensus disorder prediction 471 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02016 Bva-Chr6 13501126 13501923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02016 15 394 IDZ Gene Family AT3G50700 58.915 1.13e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g02016 zf-met 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02016 K25869 - zju:107420256 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02016 06 13501126 13501923 Bva06g02016 06 13501126 13501923 ECH