Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01994 ATGGGAAATATATCTGGAAGAGGGCCGCAGACAAGGCGTATGCATTGCCGTGGAAAATCACATATTGCACACGAGTGGTCTTCACCACCACCATCATCATCAATGATGGTGACTCCGGAAAGCCGTTGGGCGAACTTACCCCCTGAGCTGTTAGTGGACATTATACAAAGAGTAGAAGCGAGCGAAACTTCCTGGCCTGCCAGGAGAGCGGTTGTAGCTTGTGCCTCTGTCTGTAGAACTTGGAGGGAGATAACCAAGGAGCTAGTCAAGACACTAGAACAGTGTGGGTGCCTTACCTTCCCTATATCACTGAAGCAGCCCGGGCCAAGAGAGACTCCAATACAATGTTTTATTAAGAGAGAAAGGATGACCTCAACGTATTATCTATATCTTGGTCTAAGCCCTGCCCTTTCTGGGGACGTTAGCAAACTGCTATTGGCAGCGAAAAAGGTTAGAAGAGCAACATGTACAGAATTTTTAATATCCTTGGTTGCGGATGATTTCTCTCGAGCTAGCAATACTTACGTTGGAAAGATGAGGTCTAATTTTCTGGGCACTAAGTTTATGGTCTTGGATAGTCAGCCACCGCCTGATTATTCCCTTCAATCGAATTGCAAATTGCCGCGAAGAATCCTTTTGAAGCAGGTACTTCCAAGATTTTCTGCTGTTAATTATCATGTGGCTACCGTTTGTTATGAGCTCAATGTTCTCCGCACGAGGGGTCCTAGGAGAATGAGGTGTACCATCAACTCAATCCCCATATCTGCAGTCCAAGAAGGGGGCATTGCCCCTACTCCTTTGAAGTTTACTAATTGCCTTGATGAGAACTTACATACTTTGCCCatttcaaaaggaaagaaaccgGGCGTTAGCTCCAGTAGCAATGACAAGCCTCCAGAATCAACCCACAATGTAAAGGAGCCACtggttttgaaaaataaatctcctAGATGGCATGAGCAACTGCAATGTTGgtgcttaaattttaaagggCGAGTGACAGTGGCCTCTGTCAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTCACCAGAAGGTTTCAGTTGCTGAGCAAGATAAAGTGATACTACAATTTGGAAAAATTGGGAAAGACATATTCACAATGGATTACCGTTACCCTCTCTCTGCTTTTCAAGCTTTTGCAATCTGTTTGAGCAGCTTTGACACTAAACCAGCTTGTGAATG 1205 0.4324 MGNISGRGPQTRRMHCRGKSHIAHEWSSPPPSSSMMVTPESRWANLPPELLVDIIQRVEASETSWPARRAVVACASVCRTWREITKELVKTLEQCGCLTFPISLKQPGPRETPIQCFIKRERMTSTYYLYLGLSPALSGDVSKLLLAAKKVRRATCTEFLISLVADDFSRASNTYVGKMRSNFLGTKFMVLDSQPPPDYSLQSNCKLPRRILLKQVLPRFSAVNYHVATVCYELNVLRTRGPRRMRCTINSIPISAVQEGGIAPTPLKFTNCLDENLHTLPISKGKKPGVSSSSNDKPPESTHNVKEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHQKVSVAEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01994 401 MobiDBLite consensus disorder prediction 283 310 - -
Bva06g01994 401 SUPERFAMILY F-box domain 42 87 IPR036047 GO:0005515
Bva06g01994 401 SUPERFAMILY Tubby C-terminal domain-like 93 401 IPR025659 -
Bva06g01994 401 PRINTS Tubby superfamily signature 329 345 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 224 251 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 159 175 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 175 199 IPR000007 -
Bva06g01994 401 PRINTS Tubby superfamily signature 311 328 IPR000007 -
Bva06g01994 401 Gene3D - 38 92 - -
Bva06g01994 401 Gene3D Tubby Protein; Chain A 102 401 IPR025659 -
Bva06g01994 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Bva06g01994 401 Pfam Tub family 104 396 IPR000007 -
Bva06g01994 401 ProSitePatterns Tub family signature 1. 329 342 IPR018066 -
Bva06g01994 401 Pfam F-box domain 43 89 IPR001810 GO:0005515
Bva06g01994 401 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 401 - -
Bva06g01994 401 PANTHER TUBBY-RELATED 2 401 - -
Bva06g01994 401 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01994 Bva-Chr6 13390744 13393495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01994 17 401 TUB Transcription Factor Family AT1G47270 63.683 2.36e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva06g01994 Tub 9e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01994 K19600 - zju:107420271 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01994 06 13390744 13393495 Bva06g01994 06 13390744 13393495 ECH